otb: an automated HiC/HiFi pipeline assembles the Prosapia bicincta Genome.

Autor: Molik DC; Arthropod-Borne Animal Diseases Research Unit, Center for Grain and Animal Health Research, United States Department of Agriculture, Agricultural Research Service, 1515 College Ave, Manhattan, KS 66502, USA., Stahlke AR; Department of Biological Sciences, Wubben Hall and Science Center, Colorado Mesa University, 1100 North Avenue, Grand Junction, CO 81501-3122, USA., Sharma SP; Genome Informatics Facility, Iowa State University, 2200 Osborn Drive, Ames, IA 50011-4009, USA., Simmonds TJ; Tropical Pest Genetics and Molecular Biology Research Unit, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States Department of Agriculture, Agricultural Research Service, 64 Nowelo St, Hilo, HI 96720, USA., Corpuz RL; Tropical Pest Genetics and Molecular Biology Research Unit, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States Department of Agriculture, Agricultural Research Service, 64 Nowelo St, Hilo, HI 96720, USA., Kauwe AN; Tropical Pest Genetics and Molecular Biology Research Unit, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States Department of Agriculture, Agricultural Research Service, 64 Nowelo St, Hilo, HI 96720, USA., Schrader JE; Tropical Pest Genetics and Molecular Biology Research Unit, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States Department of Agriculture, Agricultural Research Service, 64 Nowelo St, Hilo, HI 96720, USA., Mason CJ; Tropical Pest Genetics and Molecular Biology Research Unit, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States Department of Agriculture, Agricultural Research Service, 64 Nowelo St, Hilo, HI 96720, USA., Sim SB; Tropical Pest Genetics and Molecular Biology Research Unit, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States Department of Agriculture, Agricultural Research Service, 64 Nowelo St, Hilo, HI 96720, USA., Geib SM; Tropical Pest Genetics and Molecular Biology Research Unit, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States Department of Agriculture, Agricultural Research Service, 64 Nowelo St, Hilo, HI 96720, USA.

Publikováno v: G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Aug 07; Vol. 14 (8).

A Unified Protocol for CRISPR/Cas9-Mediated Gene Knockout in Tephritid Fruit Flies Led to the Recreation of White Eye and White Puparium Phenotypes in the Melon Fly.

Autor: Paulo DF; Department of Plant and Environmental Protection Sciences (PEPS), The University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA., Cha AY; U.S. Department of Agriculture, Agriculture Research Service (USDA-ARS), Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center (PBARC), Hilo, HI, 96720, USA., Kauwe AN; U.S. Department of Agriculture, Agriculture Research Service (USDA-ARS), Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center (PBARC), Hilo, HI, 96720, USA., Curbelo K; U.S. Department of Agriculture, Agriculture Research Service (USDA-ARS), Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center (PBARC), Hilo, HI, 96720, USA., Corpuz RL; U.S. Department of Agriculture, Agriculture Research Service (USDA-ARS), Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center (PBARC), Hilo, HI, 96720, USA., Simmonds TJ; U.S. Department of Agriculture, Agriculture Research Service (USDA-ARS), Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center (PBARC), Hilo, HI, 96720, USA.; Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN, 37831, USA., Sim SB; U.S. Department of Agriculture, Agriculture Research Service (USDA-ARS), Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center (PBARC), Hilo, HI, 96720, USA., Geib SM; U.S. Department of Agriculture, Agriculture Research Service (USDA-ARS), Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center (PBARC), Hilo, HI, 96720, USA.

Publikováno v: Journal of economic entomology [J Econ Entomol] 2022 Dec 14; Vol. 115 (6), pp. 2110-2115.

The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research.

Autor: Childers AK; Bee Research Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, USDA, 10300 Baltimore Avenue, Beltsville, MD 20705, USA., Geib SM; Tropical Crop and Commodity Protection Research Unit, Daniel K Inouye U.S. Pacific Basin Agricultural Research Center, Agricultural Research Service, USDA, 64 Nowelo Street, Hilo, HI 96720, USA., Sim SB; Tropical Crop and Commodity Protection Research Unit, Daniel K Inouye U.S. Pacific Basin Agricultural Research Center, Agricultural Research Service, USDA, 64 Nowelo Street, Hilo, HI 96720, USA., Poelchau MF; National Agricultural Library, Agricultural Research Service, USDA, 10301 Baltimore Avenue, Beltsville, MD 20705, USA., Coates BS; Corn Insects & Crop Genetics Research Unit, Agricultural Research Service, USDA, 2310 Pammel Dr., Ames, IA 50011, USA., Simmonds TJ; Tropical Crop and Commodity Protection Research Unit, Daniel K Inouye U.S. Pacific Basin Agricultural Research Center, Agricultural Research Service, USDA, 64 Nowelo Street, Hilo, HI 96720, USA.; Oak Ridge Institute for Science and Education, P.O. Box 117, Oak Ridge, TN 37831, USA., Scully ED; Stored Product Insect and Engineering Research Unit, Center for Grain and Animal Health Research, Agricultural Research Service, USDA, 1515 College Avenue, Manhattan, KS 66502, USA., Smith TPL; Genetics and Breeding Research Unit, U.S. Meat Animal Research Center, Agricultural Research Service, USDA, State Spur 18D, Clay Center, NE 68933, USA., Childers CP; National Agricultural Library, Agricultural Research Service, USDA, 10301 Baltimore Avenue, Beltsville, MD 20705, USA., Corpuz RL; Tropical Crop and Commodity Protection Research Unit, Daniel K Inouye U.S. Pacific Basin Agricultural Research Center, Agricultural Research Service, USDA, 64 Nowelo Street, Hilo, HI 96720, USA., Hackett K; Office of National Programs, Crop Production and Protection, Agricultural Research Service, USDA, 5601 Sunnyside Avenue, Beltsville, MD 20705, USA., Scheffler B; Genomics and Bioinformatics Research Unit, Jamie Whitten Delta States Research Center, Agricultural Research Service, USDA, 141 Experiment Station Road, Stoneville, MS 38776, USA.

Publikováno v: Insects [Insects] 2021 Jul 09; Vol. 12 (7). Date of Electronic Publication: 2021 Jul 09.

Niche Conservatism for Ecological Preference in the Louisiana iris species complex.

Autor: Hamlin JAP; Department of Biology, Indiana University, Bloomington, Indiana 47405 USA., Simmonds TJ; 120 E. Green St. Department of Genetics, University of Georgia Athens, GA, 30602, USA., Arnold ML; 120 E. Green St. Department of Genetics, University of Georgia Athens, GA, 30602, USA.

Publikováno v: Biological journal of the Linnean Society. Linnean Society of London [Biol J Linn Soc Lond] 2017 Jan; Vol. 120 (1), pp. 144-154. Date of Electronic Publication: 2016 Sep 19.

Microplitis demolitor Bracovirus Proviral Loci and Clustered Replication Genes Exhibit Distinct DNA Amplification Patterns during Replication.

Autor: Burke GR; Department of Entomology, University of Georgia, Athens, Georgia, USA grburke@uga.edu., Simmonds TJ; Department of Entomology, University of Georgia, Athens, Georgia, USA., Thomas SA; Department of Entomology, University of Georgia, Athens, Georgia, USA., Strand MR; Department of Entomology, University of Georgia, Athens, Georgia, USA.

Publikováno v: Journal of virology [J Virol] 2015 Sep; Vol. 89 (18), pp. 9511-23. Date of Electronic Publication: 2015 Jul 08.