Phased nanopore assembly with Shasta and modular graph phasing with GFAse.

Autor: Lorig-Roach R; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA; rlorigro@ucsc.edu pacarnev@ucsc.edu bpaten@ucsc.edu., Meredith M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Monlong J; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Jain M; Department of Bioengineering, Department of Physics, Northeastern University, Boston, Massachusetts 02120, USA., Olsen HE; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., McNulty B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Porubsky D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA., Montague TG; The Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Neuroscience, Columbia University, New York, New York 10027, USA.; Howard Hughes Medical Institute, Columbia University, New York, New York 10032, USA., Lucas JK; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Condon C; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Eizenga JM; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Juul S; Oxford Nanopore Technologies Incorporated, New York, New York 10013, USA., McKenzie SK; Oxford Nanopore Technologies Incorporated, New York, New York 10013, USA., Simmonds SE; Chan Zuckerberg Initiative Foundation, Redwood City, California 94063, USA., Park J; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Asri M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20894, USA., Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195, USA., Axel R; The Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Neuroscience, Columbia University, New York, New York 10027, USA.; Howard Hughes Medical Institute, Columbia University, New York, New York 10032, USA., Martin B; Chan Zuckerberg Initiative Foundation, Redwood City, California 94063, USA., Carnevali P; Chan Zuckerberg Initiative Foundation, Redwood City, California 94063, USA; rlorigro@ucsc.edu pacarnev@ucsc.edu bpaten@ucsc.edu., Miga KH; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA., Paten B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California 95060, USA; rlorigro@ucsc.edu pacarnev@ucsc.edu bpaten@ucsc.edu.

Publikováno v: Genome research [Genome Res] 2024 Apr 25; Vol. 34 (3), pp. 454-468. Date of Electronic Publication: 2024 Apr 25.

Phylogenetics and comparative plastome genomics of two of the largest genera of angiosperms, Piper and Peperomia (Piperaceae).

Autor: Simmonds SE; Department of Biological Sciences, Boise State University, 1910 University Drive, Boise, ID 83725-1515, USA., Smith JF; Department of Biological Sciences, Boise State University, 1910 University Drive, Boise, ID 83725-1515, USA., Davidson C; Flora of the World Foundation, Boise, ID, USA., Buerki S; Department of Biological Sciences, Boise State University, 1910 University Drive, Boise, ID 83725-1515, USA. Electronic address: svenbuerki@boisestate.edu.

Publikováno v: Molecular phylogenetics and evolution [Mol Phylogenet Evol] 2021 Oct; Vol. 163, pp. 107229. Date of Electronic Publication: 2021 Jun 13.

Using DNA barcoding to track seafood mislabeling in Los Angeles restaurants.

Autor: Willette DA; Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA, 90095, U.S.A.; Department of Biology, Loyola Marymount University, Los Angeles, CA, 90045, U.S.A., Simmonds SE; Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA, 90095, U.S.A., Cheng SH; Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA, 90095, U.S.A., Esteves S; Department of Biology, Loyola Marymount University, Los Angeles, CA, 90045, U.S.A., Kane TL; Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA, 90095, U.S.A., Nuetzel H; Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA, 90095, U.S.A., Pilaud N; Department of Biology, Loyola Marymount University, Los Angeles, CA, 90045, U.S.A., Rachmawati R; Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA, 90095, U.S.A., Barber PH; Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA, 90095, U.S.A.

Publikováno v: Conservation biology : the journal of the Society for Conservation Biology [Conserv Biol] 2017 Oct; Vol. 31 (5), pp. 1076-1085. Date of Electronic Publication: 2017 May 10.