Notes from the Field: Early Identification of the SARS-CoV-2 Omicron BA.2.86 Variant by the Traveler-Based Genomic Surveillance Program - Dulles International Airport, August 2023.

Autor: Bart SM, Rothstein AP, Philipson CW, Smith TC, Simen BB, Tamin A, Atherton LJ, Harcourt JL, Taylor Walker A, Payne DC, Ernst ET, Morfino RC, Ruskey I, Friedman CR

Publikováno v: MMWR. Morbidity and mortality weekly report [MMWR Morb Mortal Wkly Rep] 2023 Oct 27; Vol. 72 (43), pp. 1168-1169. Date of Electronic Publication: 2023 Oct 27.

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques.

Autor: Baaijens JA; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. j.a.baaijens@tudelft.nl.; Department of Intelligent Systems, Delft University of Technology, Delft, Netherlands. j.a.baaijens@tudelft.nl., Zulli A; Department of Chemical and Environmental Engineering, Yale University, New Haven, CT, USA., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Nika I; Department of Intelligent Systems, Delft University of Technology, Delft, Netherlands., van der Lugt MJ; Department of Intelligent Systems, Delft University of Technology, Delft, Netherlands., Petrone ME; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Alpert T; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Fauver JR; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; Department of Epidemiology, University of Nebraska Medical Center, Omaha, NE, USA., Kalinich CC; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Vogels CBF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Duvallet C; Biobot Analytics, Inc., Cambridge, MA, USA., McElroy KA; Biobot Analytics, Inc., Cambridge, MA, USA., Ghaeli N; Biobot Analytics, Inc., Cambridge, MA, USA., Imakaev M; Biobot Analytics, Inc., Cambridge, MA, USA., Mckenzie-Bennett MF; Ginkgo Bioworks, Inc., Boston, MA, USA., Robison K; Ginkgo Bioworks, Inc., Boston, MA, USA., Plocik A; Ginkgo Bioworks, Inc., Boston, MA, USA., Schilling R; Ginkgo Bioworks, Inc., Boston, MA, USA., Pierson M; Ginkgo Bioworks, Inc., Boston, MA, USA., Littlefield R; Ginkgo Bioworks, Inc., Boston, MA, USA., Spencer ML; Ginkgo Bioworks, Inc., Boston, MA, USA., Simen BB; Ginkgo Bioworks, Inc., Boston, MA, USA., Hanage WP; Center for Communicable Disease Dynamics and Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA., Peccia J; Department of Chemical and Environmental Engineering, Yale University, New Haven, CT, USA., Baym M; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Publikováno v: Genome biology [Genome Biol] 2022 Nov 08; Vol. 23 (1), pp. 236. Date of Electronic Publication: 2022 Nov 08.

Deep sequencing does not reveal additional transmitted mutations in patients diagnosed with HIV-1 variants with single nucleoside reverse transcriptase inhibitor resistance mutations

Autor: Pingen, Marieke, Ende, Marchina, Wensing, AM, el Barzouhi, A, Simen, BB, Schutten, M (Martin), Boucher, Charles

Publikováno v: HIV Medicine, 14(3), 176-181. Wiley-Blackwell Publishing Ltd

Objectives The aim of the study was to gain more insight into the relationship between transmitted singletons found at HIV diagnosis by population sequencing and the possible presence of clinically relevant viral minorities containing additional resi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=narcis______::5c19e653985badc441a397ee37a8a979
https://pure.eur.nl/en/publications/3a6edff2-69d3-4815-addc-1303c636da58

Development of Novel KASP Markers for Improved Germination in Deep-Sown Direct Seeded Rice.

Autor: Sandhu, Nitika¹ (AUTHOR) nitikasandhu@pau.edu, Singh, Jasneet¹ (AUTHOR), Ankush, Ade Pooja¹ (AUTHOR), Augustine, Gaurav¹ (AUTHOR), Raigar, Om Prakash¹ (AUTHOR), Verma, Vikas Kumar¹ (AUTHOR), Pruthi, Gomsie¹ (AUTHOR), Kumar, Arvind² (AUTHOR)

Publikováno v: Rice (19398425). 5/10/2024, Vol. 17 Issue 1, p1-19. 19p.

A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing.

Autor: St John EP; 454 Life Sciences, A Roche Company, Branford, CT, United States of America., Simen BB; 454 Life Sciences, A Roche Company, Branford, CT, United States of America., Turenchalk GS; 454 Life Sciences, A Roche Company, Branford, CT, United States of America., Braverman MS; 454 Life Sciences, A Roche Company, Branford, CT, United States of America., Abbate I; National Institute for Infectious Diseases 'L. Spallanzani, Rome, Italy., Aerssens J; Janssen Infectious Diseases-Diagnostics bvba, Beerse, Belgium., Bouchez O; Plateforme Génomique Toulouse/Laboratoire Génétique Cellulaire, Toulouse, France., Gabriel C; Blutzentrale Linz, Linz, Austria., Izopet J; INSERM U563, Toulouse, France., Meixenberger K; Robert Koch-Institute, Berlin, Germany., Di Giallonardo F; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland., Schlapbach R; Functional Genomics Center Zurich, University of Zurich, ETH Zurich, Zurich, Switzerland., Paredes R; Institut de Recerca de la SIDA-IrsiCaixa, Badalona, Spain., Sakwa J; Technology Innovation Agency-National Genomics Platform, Durban, South Africa., Schmitz-Agheguian GG; Roche Applied Science, Penzberg, Germany., Thielen A; Institute of Immunology and Genetics, Kaiserslautern, Germany., Victor M; Roche Applied Science, Penzberg, Germany., Metzner KJ; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland.; Institute of Medical Virology, University of Zurich, Zurich, Switzerland., Däumer MP; Institute of Immunology and Genetics, Kaiserslautern, Germany.

Publikováno v: PloS one [PLoS One] 2016 Jan 12; Vol. 11 (1), pp. e0146687. Date of Electronic Publication: 2016 Jan 12 (Print Publication: 2016).