Differential gene co-expression network analyses reveal novel molecules associated with transcriptional dysregulation of key biological processes in osteoarthritis knee cartilage

Autor: Buzzatto-Leite, I., Afonso, J., Silva-Vignato, B., Coutinho, L.L., Alvares, L.E.

Publikováno v: In Osteoarthritis and Cartilage Open December 2022 4(4)

Identification of eQTLs using different sets of single nucleotide polymorphisms associated with carcass and body composition traits in pigs.

Autor: Freitas FAO; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13416-000, SP, Brazil.; Department of Animal Sciences, Purdue University, West Lafayette, IN, 47907, USA., Brito LF; Department of Animal Sciences, Purdue University, West Lafayette, IN, 47907, USA.; Faculty of Animal Science and Food Engineering, University of São Paulo, Pirassununga, 13635- 900, SP, Brazil., Fanalli SL; Faculty of Animal Science and Food Engineering, University of São Paulo, Pirassununga, 13635- 900, SP, Brazil., Gonçales JL; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13416-000, SP, Brazil., da Silva BPM; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13416-000, SP, Brazil., Durval MC; Faculty of Animal Science and Food Engineering, University of São Paulo, Pirassununga, 13635- 900, SP, Brazil., Ciconello FN; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13416-000, SP, Brazil., de Oliveira CS; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13416-000, SP, Brazil., Nascimento LE; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13416-000, SP, Brazil., Gervásio IC; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13416-000, SP, Brazil., Gomes JD; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13416-000, SP, Brazil., Moreira GCM; Unit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège (B34), Liège, 4000, Belgium., Silva-Vignato B; Faculty of Animal Science and Food Engineering, University of São Paulo, Pirassununga, 13635- 900, SP, Brazil., Coutinho LL; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13416-000, SP, Brazil., de Almeida VV; College of Veterinary Medicine and Animal Science, Federal University of Goiás, Goiânia, 74001-970, GO, Brazil., Cesar ASM; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13416-000, SP, Brazil. alinecesar@usp.br.; Faculty of Animal Science and Food Engineering, University of São Paulo, Pirassununga, 13635- 900, SP, Brazil. alinecesar@usp.br.

Publikováno v: BMC genomics [BMC Genomics] 2024 Jan 02; Vol. 25 (1), pp. 14. Date of Electronic Publication: 2024 Jan 02.

Transcriptome profile of skeletal muscle using different sources of dietary fatty acids in male pigs.

Autor: Fanalli SL; Faculty of Animal Science and Food Engineering, University of São Paulo, São Paulo, FZEAPirassununga, Brazil., da Silva BPM; Faculty of Animal Science and Food Engineering, University of São Paulo, São Paulo, FZEAPirassununga, Brazil., Gomes JD; Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil., de Almeida VV; College of Veterinary Medicine and Animal Science, Federal University of Goiás, Goiânia, Goiás, Brazil., Moreira GCM; GIGA Medical Genomics, Unit of Animal Genomics, University of Liège, Liège, Belgium., Silva-Vignato B; Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil., Afonso J; Brazilian Agricultural Research Corporation, Embrapa Pecuária Sudeste, São Paulo, São Carlos, Brazil., Freitas FAO; Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil., Reecy JM; Animal Science Department, Iowa State University, Ames, IA, USA., Koltes JE; Animal Science Department, Iowa State University, Ames, IA, USA., Koltes D; Animal Science Department, Iowa State University, Ames, IA, USA., Garrick D; AL Rae Centre for Genetics and Breeding, Massey University, Hamilton, New Zealand., de Almeida Regitano LC; Brazilian Agricultural Research Corporation, Embrapa Pecuária Sudeste, São Paulo, São Carlos, Brazil., de Carvalho Balieiro JC; School of Veterinary Medicine and Animal Science, University of São Paulo, São Paulo, Pirassununga, Brazil., Mourão GB; Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil., Coutinho LL; Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil., Fukumasu H; Faculty of Animal Science and Food Engineering, University of São Paulo, São Paulo, FZEAPirassununga, Brazil., Poleti MD; Faculty of Animal Science and Food Engineering, University of São Paulo, São Paulo, FZEAPirassununga, Brazil., de Alencar SM; Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil., Luchiari Filho A; Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil., Cesar ASM; Faculty of Animal Science and Food Engineering, University of São Paulo, São Paulo, FZEAPirassununga, Brazil. alinecesar@usp.br.; Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil. alinecesar@usp.br.

Publikováno v: Functional & integrative genomics [Funct Integr Genomics] 2023 Mar 03; Vol. 23 (1), pp. 73. Date of Electronic Publication: 2023 Mar 03.

Brain fatty acid and transcriptome profiles of pig fed diets with different levels of soybean oil.

Autor: da Silva BP; Faculty of Animal Science and Food Engineering, University of São Paulo, Pirassununga, São Paulo, Brazil., Fanalli SL; Faculty of Animal Science and Food Engineering, University of São Paulo, Pirassununga, São Paulo, Brazil., Gomes JD; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil., de Almeida VV; College of Veterinary Medicine and Animal Science, Federal University of Goiás, Goiânia, Goiás, Brazil., Fukumasu H; Faculty of Animal Science and Food Engineering, University of São Paulo, Pirassununga, São Paulo, Brazil., Freitas FAO; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil., Moreira GCM; Unit of Animal Genomics, University of Liège, GIGA Medical Genomics, Liège, Belgium., Silva-Vignato B; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil., Reecy JM; College of Agriculture and Life Sciences, Iowa State University, Ames, IA, USA., Koltes JE; College of Agriculture and Life Sciences, Iowa State University, Ames, IA, USA., Koltes D; College of Agriculture and Life Sciences, Iowa State University, Ames, IA, USA., de Carvalho Balieiro JC; School of Veterinary Medicine and Animal Science, University of São Paulo, Pirassununga, São Paulo, Brazil., de Alencar SM; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil., da Silva JPM; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil., Coutinho LL; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil., Afonso J; Embrapa Pecuária Sudeste, São Carlos, São Paulo, Brazil., Regitano LCA; Embrapa Pecuária Sudeste, São Carlos, São Paulo, Brazil., Mourão GB; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil., Luchiari Filho A; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil., Cesar ASM; Faculty of Animal Science and Food Engineering, University of São Paulo, Pirassununga, São Paulo, Brazil. alinecesar@usp.br.; Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil. alinecesar@usp.br.

Publikováno v: BMC genomics [BMC Genomics] 2023 Feb 28; Vol. 24 (1), pp. 91. Date of Electronic Publication: 2023 Feb 28.

Integrative Analysis Between Genome-Wide Association Study and Expression Quantitative Trait Loci Reveals Bovine Muscle Gene Expression Regulatory Polymorphisms Associated With Intramuscular Fat and Backfat Thickness.

Autor: Silva-Vignato B; Department of Animal Science, College of Agriculture 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil., Cesar ASM; Department of Agroindustry, Food, and Nutrition, College of Agriculture 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil., Afonso J; Embrapa Pecuária Sudeste, São Carlos, Brazil., Moreira GCM; Department of Animal Science, College of Agriculture 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil., Poleti MD; College of Animal Science and Food Engineering, University of São Paulo, Pirassununga, Brazil., Petrini J; Department of Animal Science, College of Agriculture 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil., Garcia IS; Department of Animal Science, College of Agriculture 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil., Clemente LG; Department of Animal Science, College of Agriculture 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil., Mourão GB; Department of Animal Science, College of Agriculture 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil., Regitano LCA; Embrapa Pecuária Sudeste, São Carlos, Brazil., Coutinho LL; Department of Animal Science, College of Agriculture 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil.

Publikováno v: Frontiers in genetics [Front Genet] 2022 Aug 04; Vol. 13, pp. 935238. Date of Electronic Publication: 2022 Aug 04 (Print Publication: 2022).