Genetic tool development in marine protists: emerging model organisms for experimental cell biology.

Autor: Faktorová D; Institute of Parasitology, Biology Centre, Czech Academy of Sciences and Faculty of Sciences, University of South Bohemia, České Budějovice, Czech Republic. dranov@paru.cas.cz., Nisbet RER; Department of Biochemistry, University of Cambridge, Cambridge, UK.; School of Biosciences, University of Nottingham, Sutton Bonington, UK., Fernández Robledo JA; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA., Casacuberta E; Institut de Biologia Evolutiva, CSIC-Universitat Pompeu Fabra, Barcelona, Spain., Sudek L; Monterey Bay Aquarium Research Institute, Moss Landing, CA, USA., Allen AE; Integrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, CA, USA.; Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA, USA., Ares M Jr; Molecular, Cell and Developmental Biology, University of California, Santa Cruz, CA, USA., Aresté C; Institut de Biologia Evolutiva, CSIC-Universitat Pompeu Fabra, Barcelona, Spain., Balestreri C; The Marine Biological Association, Plymouth and School of Ocean and Earth Sciences, University of Southampton, Southampton, UK., Barbrook AC; Department of Biochemistry, University of Cambridge, Cambridge, UK., Beardslee P; School of Biological Sciences, University of Nebraska, Lincoln, NE, USA., Bender S; Gordon and Betty Moore Foundation, Palo Alto, CA, USA., Booth DS; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA., Bouget FY; Sorbonne Université, CNRS UMR7621, Observatoire Océanologique, Banyuls sur Mer, France., Bowler C; Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France., Breglia SA; Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, Halifax, Nova Scotia, Canada., Brownlee C; The Marine Biological Association, Plymouth and School of Ocean and Earth Sciences, University of Southampton, Southampton, UK., Burger G; Department of Biochemistry and Robert-Cedergren Centre for Bioinformatics and Genomics, Université de Montréal, Montreal, Quebec, Canada., Cerutti H; School of Biological Sciences, University of Nebraska, Lincoln, NE, USA., Cesaroni R; Institute of Cell Biology, University of Bern, Bern, Switzerland., Chiurillo MA; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, USA., Clemente T; School of Biological Sciences, University of Nebraska, Lincoln, NE, USA., Coles DB; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA., Collier JL; School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, USA., Cooney EC; Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada., Coyne K; University of Delaware College of Earth, Ocean and Environment, Lewes, DE, USA., Docampo R; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, USA., Dupont CL; Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA, USA., Edgcomb V; Woods Hole Oceanographic Institution, Woods Hole, MA, USA., Einarsson E; Department of Biochemistry, University of Cambridge, Cambridge, UK., Elustondo PA; Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, Halifax, Nova Scotia, Canada.; AGADA Biosciences Inc., Halifax, Nova Scotia, Canada., Federici F; Facultad Ciencias Biológicas, Pontificia Universidad Católica de Chile, Fondo de Desarrollo de Areas Prioritarias, Center for Genome Regulation and Millennium Institute for Integrative Biology (iBio), Santiago de Chile, Chile., Freire-Beneitez V; School of Biosciences, University of Kent, Canterbury, Kent, UK.; Laboratory of Molecular and Evolutionary Parasitology, University of Kent, Kent, UK., Freyria NJ; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA., Fukuda K; Graduate School of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan., García PA; Department of Mechanical Engineering, Massachusetts Institute of Technology, Boston, MA, USA., Girguis PR; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA., Gomaa F; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA., Gornik SG; Centre for Organismal Studies, University of Heidelberg, Heidelberg, Germany., Guo J; Monterey Bay Aquarium Research Institute, Moss Landing, CA, USA.; Molecular, Cell and Developmental Biology, University of California, Santa Cruz, CA, USA., Hampl V; Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Vestec, Czech Republic., Hanawa Y; Faculty of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan., Haro-Contreras ER; Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, Halifax, Nova Scotia, Canada., Hehenberger E; Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada., Highfield A; The Marine Biological Association, Plymouth and School of Ocean and Earth Sciences, University of Southampton, Southampton, UK., Hirakawa Y; Faculty of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan., Hopes A; School of Environmental Sciences, University of East Anglia, Norwich, UK., Howe CJ; Department of Biochemistry, University of Cambridge, Cambridge, UK., Hu I; Department of Biochemistry, University of Cambridge, Cambridge, UK., Ibañez J; Facultad Ciencias Biológicas, Pontificia Universidad Católica de Chile, Fondo de Desarrollo de Areas Prioritarias, Center for Genome Regulation and Millennium Institute for Integrative Biology (iBio), Santiago de Chile, Chile., Irwin NAT; Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada., Ishii Y; Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, Japan., Janowicz NE; Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Vestec, Czech Republic., Jones AC; Gordon and Betty Moore Foundation, Palo Alto, CA, USA., Kachale A; Institute of Parasitology, Biology Centre, Czech Academy of Sciences and Faculty of Sciences, University of South Bohemia, České Budějovice, Czech Republic., Fujimura-Kamada K; Division of Environmental Photobiology, National Institute for Basic Biology, Okazaki, Aichi, Japan., Kaur B; Institute of Parasitology, Biology Centre, Czech Academy of Sciences and Faculty of Sciences, University of South Bohemia, České Budějovice, Czech Republic., Kaye JZ; Gordon and Betty Moore Foundation, Palo Alto, CA, USA., Kazana E; School of Biosciences, University of Kent, Canterbury, Kent, UK.; Laboratory of Molecular and Evolutionary Parasitology, University of Kent, Kent, UK., Keeling PJ; Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada., King N; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA., Klobutcher LA; Department of Marine Sciences, University of Connecticut , Groton, CT, USA., Lander N; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, USA., Lassadi I; Department of Biochemistry, University of Cambridge, Cambridge, UK., Li Z; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, USA., Lin S; Department of Marine Sciences, University of Connecticut , Groton, CT, USA., Lozano JC; Sorbonne Université, CNRS UMR7621, Observatoire Océanologique, Banyuls sur Mer, France., Luan F; School of Biological Sciences, University of Nebraska, Lincoln, NE, USA., Maruyama S; Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, Japan., Matute T; Facultad Ciencias Biológicas, Pontificia Universidad Católica de Chile, Fondo de Desarrollo de Areas Prioritarias, Center for Genome Regulation and Millennium Institute for Integrative Biology (iBio), Santiago de Chile, Chile., Miceli C; School of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy., Minagawa J; Division of Environmental Photobiology, National Institute for Basic Biology, Okazaki, Aichi, Japan.; Department of Basic Biology, School of Life Science, Graduate University for Advanced Studies, Okazaki, Aichi, Japan., Moosburner M; Integrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, CA, USA.; Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA, USA., Najle SR; Institut de Biologia Evolutiva, CSIC-Universitat Pompeu Fabra, Barcelona, Spain.; Instituto de Biología Molecular y Celular, CONICET, and Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina., Nanjappa D; University of Delaware College of Earth, Ocean and Environment, Lewes, DE, USA., Nimmo IC; Department of Biochemistry, University of Cambridge, Cambridge, UK., Noble L; Center for Genomics and Systems Biology, New York University, New York, NY, USA.; Institute de Biologie de l'ENS, Département de biologie, École Normale Supérieure, CNRS, INSERM, Paris, France., Novák Vanclová AMG; Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Vestec, Czech Republic., Nowacki M; Institute of Cell Biology, University of Bern, Bern, Switzerland., Nuñez I; Facultad Ciencias Biológicas, Pontificia Universidad Católica de Chile, Fondo de Desarrollo de Areas Prioritarias, Center for Genome Regulation and Millennium Institute for Integrative Biology (iBio), Santiago de Chile, Chile., Pain A; Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.; Center for Zoonosis Control, Global Institution for Collaborative Research and Education, Hokkaido University, Sapporo, Japan., Piersanti A; School of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy., Pucciarelli S; School of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy., Pyrih J; School of Biosciences, University of Kent, Canterbury, Kent, UK.; Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Vestec, Czech Republic., Rest JS; Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY, USA., Rius M; School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, USA., Robertson D; Lasry Center for Biosciences, Clark University, Worcester, MA, USA., Ruaud A; Facultad Ciencias Biológicas, Pontificia Universidad Católica de Chile, Fondo de Desarrollo de Areas Prioritarias, Center for Genome Regulation and Millennium Institute for Integrative Biology (iBio), Santiago de Chile, Chile.; Max Planck Institute for Developmental Biology, Tübingen, Germany., Ruiz-Trillo I; Institut de Biologia Evolutiva, CSIC-Universitat Pompeu Fabra, Barcelona, Spain.; Departament de Genètica Microbiologia i Estadıśtica, Universitat de Barcelona, Barcelona, Spain.; Catalan Institution for Research and Advanced Studies, Barcelona, Spain., Sigg MA; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA., Silver PA; Department of Systems Biology, Harvard Medical School, Boston, MA, USA.; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA., Slamovits CH; Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, Halifax, Nova Scotia, Canada., Jason Smith G; Department of Environmental Biotechnology, Moss Landing Marine Laboratories, Moss Landing, CA, USA., Sprecher BN; Department of Marine Sciences, University of Connecticut , Groton, CT, USA., Stern R; The Marine Biological Association, Plymouth and School of Ocean and Earth Sciences, University of Southampton, Southampton, UK., Swart EC; Institute of Cell Biology, University of Bern, Bern, Switzerland.; Max Planck Institute for Developmental Biology, Tübingen, Germany., Tsaousis AD; School of Biosciences, University of Kent, Canterbury, Kent, UK.; Laboratory of Molecular and Evolutionary Parasitology, University of Kent, Kent, UK., Tsypin L; Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL, USA.; Department of Biology, California Institute of Technology, Pasadena, CA, USA., Turkewitz A; Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL, USA., Turnšek J; Integrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, CA, USA.; Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA, USA.; Department of Systems Biology, Harvard Medical School, Boston, MA, USA.; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA., Valach M; Department of Biochemistry and Robert-Cedergren Centre for Bioinformatics and Genomics, Université de Montréal, Montreal, Quebec, Canada., Vergé V; Sorbonne Université, CNRS UMR7621, Observatoire Océanologique, Banyuls sur Mer, France., von Dassow P; Facultad Ciencias Biológicas, Pontificia Universidad Católica de Chile, Fondo de Desarrollo de Areas Prioritarias, Center for Genome Regulation and Millennium Institute for Integrative Biology (iBio), Santiago de Chile, Chile.; Instituto Milenio de Oceanografia de Chile, Concepción, Chile., von der Haar T; School of Biosciences, University of Kent, Canterbury, Kent, UK., Waller RF; Department of Biochemistry, University of Cambridge, Cambridge, UK., Wang L; Institute of Oceanography, Minjiang University, Fuzhou, China., Wen X; School of Biological Sciences, University of Nebraska, Lincoln, NE, USA., Wheeler G; The Marine Biological Association, Plymouth and School of Ocean and Earth Sciences, University of Southampton, Southampton, UK., Woods A; Department of Environmental Biotechnology, Moss Landing Marine Laboratories, Moss Landing, CA, USA., Zhang H; Department of Marine Sciences, University of Connecticut , Groton, CT, USA., Mock T; School of Environmental Sciences, University of East Anglia, Norwich, UK. t.mock@uea.ac.uk., Worden AZ; Monterey Bay Aquarium Research Institute, Moss Landing, CA, USA. azworden@geomar.de.; Ocean EcoSystems Biology Unit, Marine Ecology Division, Helmholtz Centre for Ocean Research, Kiel, Germany. azworden@geomar.de., Lukeš J; Institute of Parasitology, Biology Centre, Czech Academy of Sciences and Faculty of Sciences, University of South Bohemia, České Budějovice, Czech Republic. jula@paru.cas.cz.

Publikováno v: Nature methods [Nat Methods] 2020 May; Vol. 17 (5), pp. 481-494. Date of Electronic Publication: 2020 Apr 06.

Predicted glycosyltransferases promote development and prevent spurious cell clumping in the choanoflagellate S. rosetta .

Autor: Wetzel LA; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States., Levin TC; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States., Hulett RE; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States., Chan D; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States., King GA; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States., Aldayafleh R; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States., Booth DS; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States., Sigg MA; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States., King N; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States.

Publikováno v: ELife [Elife] 2018 Dec 17; Vol. 7. Date of Electronic Publication: 2018 Dec 17.

Evolutionary Proteomics Uncovers Ancient Associations of Cilia with Signaling Pathways.

Autor: Sigg MA; Department of Biochemistry and Biophysics, Cardiovascular Research Institute, University of California, San Francisco, CA 94158, USA., Menchen T; Department of General Pediatrics, University Children's Hospital Muenster, Muenster 48149, Germany., Lee C; Department of Molecular Biosciences, Center for Systems and Synthetic Biology and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA., Johnson J; Gladstone Institute of Cardiovascular Disease and Gladstone Institute of Virology and Immunology, San Francisco, CA 94158, USA., Jungnickel MK; Department of Cell and Developmental Biology, University of Massachusetts Medical School, Worcester, MA 01655, USA., Choksi SP; Department of Biochemistry and Biophysics, Cardiovascular Research Institute, University of California, San Francisco, CA 94158, USA., Garcia G 3rd; Department of Biochemistry and Biophysics, Cardiovascular Research Institute, University of California, San Francisco, CA 94158, USA., Busengdal H; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen 5008, Norway., Dougherty GW; Department of General Pediatrics, University Children's Hospital Muenster, Muenster 48149, Germany., Pennekamp P; Department of General Pediatrics, University Children's Hospital Muenster, Muenster 48149, Germany., Werner C; Department of General Pediatrics, University Children's Hospital Muenster, Muenster 48149, Germany., Rentzsch F; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen 5008, Norway., Florman HM; Department of Cell and Developmental Biology, University of Massachusetts Medical School, Worcester, MA 01655, USA., Krogan N; Gladstone Institute of Cardiovascular Disease and Gladstone Institute of Virology and Immunology, San Francisco, CA 94158, USA; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, USA., Wallingford JB; Department of Molecular Biosciences, Center for Systems and Synthetic Biology and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA., Omran H; Department of General Pediatrics, University Children's Hospital Muenster, Muenster 48149, Germany., Reiter JF; Department of Biochemistry and Biophysics, Cardiovascular Research Institute, University of California, San Francisco, CA 94158, USA. Electronic address: jeremy.reiter@ucsf.edu.

Publikováno v: Developmental cell [Dev Cell] 2017 Dec 18; Vol. 43 (6), pp. 744-762.e11.