Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Shuoyong Shi"'
Autor:
Hua Cheng, R Dustin Schaeffer, Yuxing Liao, Lisa N Kinch, Jimin Pei, Shuoyong Shi, Bong-Hyun Kim, Nick V Grishin
Publikováno v:
PLoS Computational Biology, Vol 10, Iss 12, p e1003926 (2014)
Understanding the evolution of a protein, including both close and distant relationships, often reveals insight into its structure and function. Fast and easy access to such up-to-date information facilitates research. We have developed a hierarchica
Externí odkaz:
https://doaj.org/article/e69bf408313645bb90454b2e05f85df3
Publikováno v:
Journal of molecular biology. 428(21)
Globular proteins typically fold into tightly packed arrays of regular secondary structures. We developed a model to approximate the compact parallel and antiparallel arrangement of α-helices and β-strands, enumerated all possible topologies formed
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::82fc22508057d9a7b1791d62a44e1c04
https://pubmed.ncbi.nlm.nih.gov/27498165
https://pubmed.ncbi.nlm.nih.gov/27498165
Autor:
Nick V. Grishin, Qian Cong, Jimin Pei, Hua Cheng, Valerio Mariani, Torsten Schwede, Shuoyong Shi, Lisa N. Kinch
Publikováno v:
Proteins: Structure, Function, and Bioinformatics. 79:21-36
The Critical assessment of protein structure prediction round 9 (CASP9) aimed to evaluate predictions for 129 experimentally determined protein structures. To assess tertiary structure predictions, these target structures were divided into domain-bas
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6f7a2fcf51fbdb0231a6f77c69acc352
https://doi.org/10.1002/prot.23190
https://doi.org/10.1002/prot.23190
ProSMoS server: a pattern-based search using interaction matrix representation of protein structures
Publikováno v:
Nucleic Acids Research
Assessing structural similarity and defining common regions through comparison of protein spatial structures is an important task in functional and evolutionary studies of proteins. There are many servers that compare structures and define sub-struct
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d7d7bd2a2a10b211c2a8c2f4776d83ab
https://doi.org/10.1093/nar/gkp316
https://doi.org/10.1093/nar/gkp316
Publikováno v:
Bioinformatics. 23:1331-1338
Motivation: Many evolutionarily distant, but functionally meaningful links between proteins come to light through comparison of spatial structures. Most programs that assess structural similarity compare two proteins to each other and find regions in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eb54b1ddd18006a93ed995ca8afc624a
https://doi.org/10.1093/bioinformatics/btm121
https://doi.org/10.1093/bioinformatics/btm121
Autor:
Yuxing Liao, Shuoyong Shi, Bong Hyun Kim, Hua Cheng, Nick V. Grishin, Lisa N. Kinch, R. Dustin Schaeffer, Jimin Pei
Publikováno v:
PLoS Computational Biology
PLoS Computational Biology, Vol 10, Iss 12, p e1003926 (2014)
PLoS Computational Biology, Vol 10, Iss 12, p e1003926 (2014)
Understanding the evolution of a protein, including both close and distant relationships, often reveals insight into its structure and function. Fast and easy access to such up-to-date information facilitates research. We have developed a hierarchica
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c51511fed2b17e22e274a41f64472630
http://europepmc.org/articles/PMC4256011
http://europepmc.org/articles/PMC4256011
Autor:
Yuxing Liao, Shuoyong Shi, Klaus Brinkmann, Sven Bogdan, Chi W. Pak, Baoyu Chen, Zhucheng Chen, Michael K. Rosen, Lisa Henry, Nick V. Grishin
Publikováno v:
Cell. 156(1-2)
SummaryThe WAVE regulatory complex (WRC) controls actin cytoskeletal dynamics throughout the cell by stimulating the actin-nucleating activity of the Arp2/3 complex at distinct membrane sites. However, the factors that recruit the WRC to specific loc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f1113359dc4e5c45e7a804779ffd4f11
https://pubmed.ncbi.nlm.nih.gov/24439365
https://pubmed.ncbi.nlm.nih.gov/24439365
Autor:
Lisa N. Kinch, Vyacheslav N. Grishin, Shuoyong Shi, Nick V. Grishin, Jimin Pei, Qian Cong, Wenlin Li
Publikováno v:
Bioinformatics (Oxford, England). 27(24)
Motivation: Manual inspection has been applied to and is well accepted for assessing critical assessment of protein structure prediction (CASP) free modeling (FM) category predictions over the years. Such manual assessment requires expertise and sign
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ec30518ff728ec148e470f39ba5ab289
https://pubmed.ncbi.nlm.nih.gov/21994223
https://pubmed.ncbi.nlm.nih.gov/21994223
Autor:
Lisa N, Kinch, Shuoyong, Shi, Hua, Cheng, Qian, Cong, Jimin, Pei, Valerio, Mariani, Torsten, Schwede, Nick V, Grishin
Publikováno v:
Proteins. 79
The Critical assessment of protein structure prediction round 9 (CASP9) aimed to evaluate predictions for 129 experimentally determined protein structures. To assess tertiary structure predictions, these target structures were divided into domain-bas
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::fe9039529e61affeaef5f24445c991cc
https://pubmed.ncbi.nlm.nih.gov/21997778
https://pubmed.ncbi.nlm.nih.gov/21997778
Autor:
Jing Tong, Indraneel Majumdar, Lisa N. Kinch, Bong Hyun Kim, Shuoyong Shi, Jimin Pei, Nick V. Grishin, Ruslan I. Sadreyev, Hua Cheng
Publikováno v:
Database: The Journal of Biological Databases and Curation
Results of the recent Critical Assessment of Techniques for Protein Structure Prediction, CASP8, present several valuable sources of information. First, CASP targets comprise a realistic sample of currently solved protein structures and exemplify the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e305675ae2a9ee7a08e6f1323ca9ca11
https://doi.org/10.1093/database/bap003
https://doi.org/10.1093/database/bap003