Zobrazeno 1 - 10
of 39
pro vyhledávání: '"Shuofeng Hu"'
Autor:
Sijing An, Jinhui Shi, Runyan Liu, Jing Wang, Shuofeng Hu, Guohua Dong, Xiaomin Ying, Zhen He
Publikováno v:
Mathematics, Vol 11, Iss 24, p 4901 (2023)
Clustering analysis for single-cell RNA sequencing (scRNA-seq) data is essential for characterizing cellular heterogeneity. However, batch information caused by batch effects is often confused with the intrinsic biological information in scRNA-seq da
Externí odkaz:
https://doaj.org/article/475826d20f9249d9a073421f39f9f904
Autor:
Pu Liu, Shuofeng Hu, Zhen He, Chao Feng, Guohua Dong, Sijing An, Runyan Liu, Fang Xu, Yaowen Chen, Xiaomin Ying
Publikováno v:
Frontiers in Microbiology, Vol 13 (2022)
Intestinal bacteria strains play crucial roles in maintaining host health. Researchers have increasingly recognized the importance of strain-level analysis in metagenomic studies. Many analysis tools and several cutting-edge sequencing techniques lik
Externí odkaz:
https://doaj.org/article/be6bdafeefb046dcb80a4ecdf716775e
Autor:
Yaowen Chen, Pu Liu, Runyan Liu, Shuofeng Hu, Zhen He, Guohua Dong, Chao Feng, Sijing An, Xiaomin Ying
Publikováno v:
mSystems, Vol 6, Iss 4 (2021)
ABSTRACT Liver cirrhosis (LC) has been associated with gut microbes. However, the strain diversity of species and its association with LC have received little attention. Here, we constructed a computational framework to study the strain heterogeneity
Externí odkaz:
https://doaj.org/article/9b85aecb87c4409289baaa432ecdf0ed
Autor:
Sen Cheng, Jiaqi Wu, Chuzhong Li, Yangfang Li, Chunhui Liu, Guilin Li, Wuju Li, Shuofeng Hu, Xiaomin Ying, Yazhuo Zhang
Publikováno v:
Journal of Translational Medicine, Vol 17, Iss 1, Pp 1-9 (2019)
Abstract Background Compared with clinically functioning pituitary adenoma (FPA), clinically non-functioning pituitary adenoma (NFPA) lacks of detectable hypersecreting serum hormones and related symptoms which make it difficult to predict the progno
Externí odkaz:
https://doaj.org/article/5f7ac34eb5a14ec5a4f53068c74fb4b7
Autor:
Min Zhang, Chao Feng, Xingchen Zhang, Shuofeng Hu, Yuan Zhang, Min Min, Bing Liu, Xiaomin Ying, Yan Liu
Publikováno v:
Frontiers in Medicine, Vol 7 (2021)
Objectives: This work aims to study the gastrointestinal (GI) symptoms in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-infected patients and the susceptibility factors of the stomach for SARS-CoV-2.Materials and Methods: We investigat
Externí odkaz:
https://doaj.org/article/e39a14329bcb4a0c89de0e217d390830
Publikováno v:
PeerJ, Vol 5, p e3385 (2017)
Gastric cancer is an aggressive cancer that is often diagnosed late. Early detection and treatment require a better understanding of the molecular pathology of the disease. The present study combined data on gene expression and regulatory levels (mic
Externí odkaz:
https://doaj.org/article/f5b01a1db18f4aa8a97295f2bc90bc88
Autor:
Ya Wang, Walter J. Curran, Wuju Li, Xiaofei Zheng, Chenguang Wang, Xiang Wang, Shuofeng Hu, Wooi Loon Ng, Hongyan Wang, Yazhuo Li, Po Zhao, Fang Yu, Jipo Sheng, I. King Jordan, Jittima Piriyapongsa, Jian Wang, Xiaomin Ying, Baocheng Hu
PDF file - 858KB, Supplementary Methods, Supplementary References, Figure S1-6, Table S1-5. Figure S1. Identification of a new miR in FHIT intron. Figure S2. The SNP variant around the Pri-C2-miR region in FHIT did not affect the C2-miR expression. F
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2c2c33f8880df41a8e3a05adfc11e683
https://doi.org/10.1158/0008-5472.22400802
https://doi.org/10.1158/0008-5472.22400802
Autor:
Ya Wang, Walter J. Curran, Wuju Li, Xiaofei Zheng, Chenguang Wang, Xiang Wang, Shuofeng Hu, Wooi Loon Ng, Hongyan Wang, Yazhuo Li, Po Zhao, Fang Yu, Jipo Sheng, I. King Jordan, Jittima Piriyapongsa, Jian Wang, Xiaomin Ying, Baocheng Hu
Loss or attenuated expression of the tumor-suppressor gene FHIT is associated paradoxically with poor progression of human tumors. Fhit promotes apoptosis and regulates reactive oxygen species; however, the mechanism by which Fhit inhibits tumor grow
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5b95b8242a2ec5d75a8c37d584dbbf2e
https://doi.org/10.1158/0008-5472.c.6505680
https://doi.org/10.1158/0008-5472.c.6505680
Autor:
Zhen He, Yaowen Chen, Shuofeng Hu, Sijing An, Junfeng Shi, Runyan Liu, Jiahao Zhou, Guohua Dong, Jinhui Shi, Jiaxin Zhao, Jing Wang, Yuan Zhu, Le Ou-Yang, Xiaochen Bo, Xiaomin Ying
Rapidly developing single-cell multi-omics sequencing technologies generate increasingly large bodies of multimodal data. Integrating multimodal data from different sequencing technologies,i.e. mosaic data, permits larger-scale investigation with mor
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::759b159d99edf5f10cc7a98fa4acc624
https://doi.org/10.1101/2022.12.13.520262
https://doi.org/10.1101/2022.12.13.520262
Publikováno v:
Briefings in Bioinformatics. 23
Sequence logos are used to visually display conservations and variations in short sequences. They can indicate the fixed patterns or conserved motifs in a batch of DNA or protein sequences. However, most of the popular sequence logo generators are ba