Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Shunhua Han"'
Publikováno v:
Mobile DNA, Vol 14, Iss 1, Pp 1-19 (2023)
Abstract Background Many computational methods have been developed to detect non-reference transposable element (TE) insertions using short-read whole genome sequencing data. The diversity and complexity of such methods often present challenges to ne
Externí odkaz:
https://doaj.org/article/5db00dade9bc47d08c5e99a9182ae814
Autor:
Mei Yang, Yanhui Fan, Zhi-Yong Wu, Jin Gu, Zhendong Feng, Qiangzu Zhang, Shunhua Han, Zhonghai Zhang, Xu Li, Yi-Ching Hsueh, Yanxiang Ni, Xiaoling Li, Jieqing Li, Meixia Hu, Weiping Li, Hongfei Gao, Ciqiu Yang, Chunming Zhang, Liulu Zhang, Teng Zhu, Minyi Cheng, Fei Ji, Juntao Xu, Hening Cui, Guangming Tan, Michael Q. Zhang, Changhong Liang, Zaiyi Liu, You-Qiang Song, Gang Niu, Kun Wang
Publikováno v:
EBioMedicine, Vol 69, Iss , Pp 103446- (2021)
Background: Breast cancers can be divided into HER2-negative and HER2-positive subtypes according to different status of HER2 gene. Despite extensive studies connecting germline mutations with possible risk of HER2-negative breast cancer, the main ca
Externí odkaz:
https://doaj.org/article/e0a93f66f07e4e4c8bc8d205d5087231
Publikováno v:
PeerJ, Vol 5, p e3824 (2017)
The Drosophila melanogaster P transposable element provides one of the best cases of horizontal transfer of a mobile DNA sequence in eukaryotes. Invasion of natural populations by the P element has led to a syndrome of phenotypes known as P-M hybrid
Externí odkaz:
https://doaj.org/article/bed523fbaca144009be9683711539aa0
Autor:
Zhonghai Zhang, Zhi-Yong Wu, Hong-Fei Gao, Michael Q. Zhang, Hening Cui, Xue Yiqing, Kun Wang, Fan Yanhui, Juntao Xu, Fei Ji, Jieqing Li, Min-Yi Cheng, Changhong Liang, Ci-Qiu Yang, Shunhua Han, Zhang Chunming, Guangming Tan, Feng Zhendong, Zaiyi Liu, Teng Zhu, Liulu Zhang, Weiping Li, Xiaoling Li, Gang Niu, You-Qiang Song, Meixia Hu, Qiangzu Zhang, Xu Li, Mei Yang
Publikováno v:
Cancer Research. 81:PS8-29
Background: Pathogenic factors embedded in the germline genome are widely recognized as being crucial to breast cancer development. However, current knowledge is either concentrated on the pathogenic variants of a few individual genes or SNPs distrib
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6765f07c7841925d803a99fbfd6ad1a5
https://doi.org/10.1158/1538-7445.sabcs20-ps8-29
https://doi.org/10.1158/1538-7445.sabcs20-ps8-29
Autor:
Shunhua Han, Guilherme B Dias, Preston J Basting, Michael G Nelson, Sanjai Patel, Mar Marzo, Casey M Bergman
Publikováno v:
Genetics. 221
Cultured cells are widely used in molecular biology despite poor understanding of how cell line genomes change in vitro over time. Previous work has shown that Drosophila cultured cells have a higher transposable element content than whole flies, but
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::55b14ae904804a4cb98558c863c29d51
https://doi.org/10.1093/genetics/iyac077
https://doi.org/10.1093/genetics/iyac077
Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line
Autor:
Shunhua Han, Guilherme B Dias, Preston J Basting, Raghuvir Viswanatha, Norbert Perrimon, Casey M Bergman
Animal cell lines cultured for extended periods often undergo extreme genome restructuring events, including polyploidy and segmental aneuploidy that can impede de novo whole-genome assembly (WGA). In Drosophila, many established cell lines also exhi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ee88c710e6e526aceb84423edea93935
https://doi.org/10.1101/2022.01.04.471818
https://doi.org/10.1101/2022.01.04.471818
Autor:
Shunhua Han, Guilherme Dias, Preston J. Basting, Michael G. Nelson, Sanjai Patel, Mar Marzo, Casey M. Bergman
Cultured cells are widely used in molecular biology despite poor understanding of how cell line genomes change in vitro over time. Previous work has shown that Drosophila cultured cells have a higher transposable element (TE) content than whole flies
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e85106c0acdbc6f960972d2e2db220c5
https://doi.org/10.1101/2021.12.08.471819
https://doi.org/10.1101/2021.12.08.471819
Autor:
Daniel Mariyappa, Shunhua Han, Casey M. Bergman, Arthur Luhur, Danielle Overton, Douglas B. Rusch, Andrew C. Zelhof, David F.B. Miller
Publikováno v:
G3 Genes|Genomes|Genetics. 12
Drosophila cell lines are used by researchers to investigate various cell biological phenomena. It is crucial to exercise good cell culture practice. Poor handling can lead to both inter- and intra-species cross-contamination. Prolonged culturing can
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3ac7d5ff6e12759705b2bfc7263a5271
https://doi.org/10.1093/g3journal/jkab403
https://doi.org/10.1093/g3journal/jkab403
Autor:
Andrew C. Zelhof, Danielle Overton, David F.B. Miller, Casey M. Bergman, Douglas B. Rusch, Arthur Luhur, Shunhua Han, Daniel Mariyappa
Drosophila cell lines are used by researchers to investigate various cell biological phenomena. It is crucial to exercise good cell culture practice. Poor handling can lead to both inter- and intraspecies cross-contamination. Prolonged culturing can
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8a1be1d7340c1444c15e0c3a6c8117c2
https://doi.org/10.1101/2021.08.16.456580
https://doi.org/10.1101/2021.08.16.456580
Autor:
Andrew C. Zelhof, Casey M. Bergman, Guilherme B. Dias, Shunhua Han, Arthur Luhur, Preston J. Basting
Publikováno v:
Genetics
Proper identification of cell lines is a requirement of rigorous research involving cultured cells. Here we develop an innovative strategy to identify cell lines using transposable element profiles and apply this novel strategy one of the most import
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1ecf6055c6a7496a67eb807fa1615df2
https://doi.org/10.1101/2021.04.24.441253
https://doi.org/10.1101/2021.04.24.441253