Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Shufei Lei"'
Autor:
Tomas Hessler, Robert J. Huddy, Rohan Sachdeva, Shufei Lei, Susan T. L. Harrison, Spencer Diamond, Jillian F. Banfield
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-12 (2023)
Abstract Metagenomic or metabarcoding data are often used to predict microbial interactions in complex communities, but these predictions are rarely explored experimentally. Here, we use an organism abundance correlation network to investigate factor
Externí odkaz:
https://doaj.org/article/7d2f93f7bbd141dc8c8af112c5549cbb
Autor:
Paula B. Matheus Carnevali, Adi Lavy, Alex D. Thomas, Alexander Crits-Christoph, Spencer Diamond, Raphaël Méheust, Matthew R. Olm, Allison Sharrar, Shufei Lei, Wenming Dong, Nicola Falco, Nicholas Bouskill, Michelle E. Newcomer, Peter Nico, Haruko Wainwright, Dipankar Dwivedi, Kenneth H. Williams, Susan Hubbard, Jillian F. Banfield
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-23 (2021)
Abstract Background Biogeochemical exports from watersheds are modulated by the activity of microorganisms that function over micron scales. Here, we tested the hypothesis that meander-bound regions share a core microbiome and exhibit patterns of met
Externí odkaz:
https://doaj.org/article/11bcfb2d746b455399a7398f30bb8085
Autor:
Marco A. Crisci, Lin-Xing Chen, Audra E. Devoto, Adair L. Borges, Nicola Bordin, Rohan Sachdeva, Adrian Tett, Allison M. Sharrar, Nicola Segata, Francesco Debenedetti, Mick Bailey, Rachel Burt, Rhiannon M. Wood, Lewis J. Rowden, Paula M. Corsini, Steven van Winden, Mark A. Holmes, Shufei Lei, Jillian F. Banfield, Joanne M. Santini
Publikováno v:
iScience, Vol 24, Iss 8, Pp 102875- (2021)
Summary: Lak phages with alternatively coded ∼540 kbp genomes were recently reported to replicate in Prevotella in microbiomes of humans that consume a non-Western diet, baboons, and pigs. Here, we explore Lak phage diversity and broader distributi
Externí odkaz:
https://doaj.org/article/6fb802688c864ef6b3a40e869846f788
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Prokaryote mobilome genomes rely on host machineries for survival and replication. Given that mobile genetic elements (MGEs) derive their energy from host cells, we investigated the diversity of ATP-utilizing proteins in MGE genomes to determine whet
Externí odkaz:
https://doaj.org/article/710c5ee8d7da4bf6ac1c69c224601759
Autor:
Tomas Hessler, Robert J. Huddy, Rohan Sachdeva, Shufei Lei, Susan T.L. Harrison, Spencer Diamond, Jillian F. Banfield
Microbial communities are fundamental components of most ecosystems but little is known about the interactions that structure them. Metagenomic data have revolutionized our understanding of complex consortia, yet predicted interactions are rarely exp
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::778b5c332bf9c2144b89eac7fa5fad76
https://doi.org/10.1101/2023.01.27.524772
https://doi.org/10.1101/2023.01.27.524772
Autor:
Adair L. Borges, Yue Clare Lou, Rohan Sachdeva, Basem Al-Shayeb, Petar I. Penev, Alexander L. Jaffe, Shufei Lei, Joanne M. Santini, Jillian F. Banfield
Publikováno v:
Nature microbiology, vol 7, iss 6
Bacteriophages (phages) are obligate parasites that use host bacterial translation machinery to produce viral proteins. However, some phages have alternative genetic codes with reassigned stop codons that are predicted to be incompatible with bacteri
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8f71f025e172baeb901567d441423ee2
https://escholarship.org/uc/item/9415j2sq
https://escholarship.org/uc/item/9415j2sq
Autor:
Adair L, Borges, Yue Clare, Lou, Rohan, Sachdeva, Basem, Al-Shayeb, Petar I, Penev, Alexander L, Jaffe, Shufei, Lei, Joanne M, Santini, Jillian F, Banfield
Publikováno v:
Nature microbiology. 7(6)
Bacteriophages (phages) are obligate parasites that use host bacterial translation machinery to produce viral proteins. However, some phages have alternative genetic codes with reassigned stop codons that are predicted to be incompatible with bacteri
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::a5dc87ebb81720af6e0dbb859113cb8c
https://pubmed.ncbi.nlm.nih.gov/35618772
https://pubmed.ncbi.nlm.nih.gov/35618772
Autor:
Shufei Lei, Alexander L. Jaffe, Yue Clare Lou, Joanne M. Santini, Jillian F. Banfield, Adair L. Borges, Basem Al-Shayeb, Rohan Sachdeva
The genetic code is a highly conserved feature of life. However, some “alternative” genetic codes use reassigned stop codons to code for amino acids. Here, we survey stop codon recoding across bacteriophages (phages) in human and animal gut micro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3e4d25b6ebb101cc34eafdd96e7fefb4
https://doi.org/10.1101/2021.08.26.457843
https://doi.org/10.1101/2021.08.26.457843
Autor:
Marco Alberto Crisci, Mick Bailey, Joanne M. Santini, Rohan Sachdeva, Paula M. Corsini, Mark A. Holmes, Rhiannon M. Wood, Lin-Xing Chen, Jillian F. Banfield, Lewis J. Rowden, Rachel Burt, Allison Sharrar, Francesco Debenedetti, Nicola Bordin, Shufei Lei, Audra E. Devoto, Steven Van Winden, Adrian Tett, Nicola Segata, Adair L. Borges
Publikováno v:
iScience, vol 24, iss 8
iScience
iScience, Vol 24, Iss 8, Pp 102875-(2021)
iScience
iScience, Vol 24, Iss 8, Pp 102875-(2021)
Summary Lak phages with alternatively coded ∼540 kbp genomes were recently reported to replicate in Prevotella in microbiomes of humans that consume a non-Western diet, baboons, and pigs. Here, we explore Lak phage diversity and broader distributio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::56a5e95b6e8f6869c07df8a5ef735cf5
https://www.repository.cam.ac.uk/handle/1810/328964
https://www.repository.cam.ac.uk/handle/1810/328964
Publikováno v:
ACS Applied Materials & Interfaces. 11:28830-28840
Two-dimensional (2D) Dirac materials with ultrahigh electronic conductivity exhibit great promise for application as an anode material in non-lithium-ion batteries (NLIBs) with a reduced conductive additive and a binder as a nonactive material additi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6851f2a12cd081995d828a855b9a7dd4
https://doi.org/10.1021/acsami.9b07219
https://doi.org/10.1021/acsami.9b07219