Výsledky vyhledávání - "Shuaa M. A. Alharbi"

Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers

Autor: Liam J McGuffin, Nicholas S Edmunds, Ahmet G Genc, Shuaa M A Alharbi, Bajuna R Salehe, Recep Adiyaman

Publikováno v: Nucleic Acids Research.

The IntFOLD server based at the University of Reading has been a leading method over the past decade in providing free access to accurate prediction of protein structures and functions. In a post-AlphaFold2 world, accurate models of tertiary structur

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::cfa9272a3defc2ae7b343865638eef7f
https://doi.org/10.1093/nar/gkad297

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Estimation of Model Accuracy in CASP15 Using the ModFOLDdock Server

Autor: Liam McGuffin, Nicholas S. Edmunds, Shuaa M. A. Alharbi, Ahmet G. Genc, Recep Adiyaman

In CASP15 there was a greater emphasis on multimeric modelling than in previous experiments, with assembly structures nearly doubling in number (41 up from 22) since the previous round. CASP15 also included a new estimation of model accuracy (EMA) ca

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::130143278c8e259a0581a10112a05e01
https://doi.org/10.22541/au.168053625.53345509/v1

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Machine Learning Methods for Predicting Protein Contacts

Autor: Shuaa M. A. Alharbi, Liam J. McGuffin

Publikováno v: Machine Learning in Bioinformatics of Protein Sequences ISBN: 9789811258572

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::c9523af14c9cbcb15f545d76f5a6b859
https://doi.org/10.1142/9789811258589_0006

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Improvement of protein tertiary and quaternary structure predictions using the ReFOLD4 refinement method and the AlphaFold2 recycling process

Autor: Recep Adiyaman, Nicholas S. Edmunds, Ahmet G. Genc, Shuaa M. A. Alharbi, Liam J. McGuffin

MotivationThe accuracy gap between predicted and experimental structures has been significantly reduced following the development of AlphaFold2. However, for further studies, such as drug discovery and protein design, AlphaFold2 structures need to be

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::e0b7637e1eb8d8e551c1e493d9a30f14
https://doi.org/10.1101/2022.12.06.519289

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ModFOLD8: accurate global and local quality estimates for 3D protein models

Autor: Shuaa M A Alharbi, Recep Adiyaman, Liam J. McGuffin, Fahd M F Aldowsari

Publikováno v: Nucleic Acids Research

Methods for estimating the quality of 3D models of proteins are vital tools for driving the acceptance and utility of predicted tertiary structures by the wider bioscience community. Here we describe the significant major updates to ModFOLD, which ha

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8d97552dc20624cb727de29e238b2715
http://europepmc.org/articles/PMC8218196

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