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pro vyhledávání: '"Shreif, Zeina"'
Autor:
Shreif, Zeina.
Thesis (Ph. D.)--Indiana University, Dept. of Chemistry, 2008.
Title from PDF t.p. (viewed Jul 23, 2009). Source: Dissertation Abstracts International, Volume: 69-10, Section: B, page: 6130. Adviser: Peter Ortoleva.
Title from PDF t.p. (viewed Jul 23, 2009). Source: Dissertation Abstracts International, Volume: 69-10, Section: B, page: 6130. Adviser: Peter Ortoleva.
A nucleotide sequence 35 base pairs long can take 1,180,591,620,717,411,303,424 possible values. An example of systems biology datasets, protein binding microarrays, contain activity data from about 40000 such sequences. The discrepancy between the n
Externí odkaz:
http://arxiv.org/abs/1312.4576
Autor:
Shreif, Zeina, Ortoleva, Peter
Publikováno v:
Journal of Chemical Physics, 2011. 134, 104106
Quantum nanosystems such as graphene nanoribbons or superconducting nanoparticles are studied via a multiscale approach. Long space-time dynamics is derived using a perturbation expansion in the ratio of the nearest-neighbor distance to a nanometer-s
Externí odkaz:
http://arxiv.org/abs/1103.1862
Publikováno v:
Journal of Chemical Physics 130: 194115, 2009
The kinetics of the self-assembly of nanocomponents into a virus, nanocapsule, or other composite structure is analyzed via a multiscale approach. The objective is to achieve predictability and to preserve key atomic-scale features that underlie the
Externí odkaz:
http://arxiv.org/abs/1003.1563
Publikováno v:
Physica A, 387:4053-4069, 2008
Using multiscale analysis and methods of statistical physics, we show that a solution to the N-atom Liouville Equation can be decomposed via an expansion in terms of a smallness parameter epsilon, wherein the long scale time behavior depends upon a r
Externí odkaz:
http://arxiv.org/abs/1001.1216
Publikováno v:
Journal of Chemical Physics 128: 234908, 2008
An approach for simulating bionanosystems, such as viruses and ribosomes, is presented. This calibration-free approach is based on an all-atom description for bionanosystems, a universal interatomic force field, and a multiscale perspective. The supr
Externí odkaz:
http://arxiv.org/abs/1001.1213
Publikováno v:
Physical Review E, 80:031703, 2009
A rigorous theory of liquid-crystal transitions is developed starting from the Liouville equation. The starting point is an all-atom description and a set of order parameter field variables that are shown to evolve slowly via Newton's equations. The
Externí odkaz:
http://arxiv.org/abs/1001.0271
Publikováno v:
BMC Bioinformatics. 12/22/2016, Vol. 17, p1-13. 13p. 3 Diagrams, 5 Graphs.
Autor:
Shreif, Zeina1, Periwal, Vipul1 vipulp@mail.nih.gov
Publikováno v:
PLoS Computational Biology. Feb2014, Vol. 10 Issue 2, p1-23. 23p. 4 Diagrams, 1 Chart, 10 Graphs.
Autor:
Shreif, Zeina1, Ortoleva, Peter1 ortoleva@indiana.edu
Publikováno v:
Computational & Mathematical Methods in Medicine. Mar2009, Vol. 10 Issue 1, p49-70. 22p. 1 Diagram, 1 Chart, 2 Graphs.