Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Shouta, Nonoyama"'
Autor:
Shouta Nonoyama, Shintaro Maeno, Yasuhiro Gotoh, Ryota Sugimoto, Kan Tanaka, Tetsuya Hayashi, Shinji Masuda
Publikováno v:
mBio, Vol 15, Iss 10 (2024)
ABSTRACT We investigated the impact of intracellular hydrogen sulfide (H2S) hyperaccumulation on the transcriptome of Escherichia coli. The wild-type (WT) strain overexpressing mstA, encoding 3-mercaptopyruvate sulfur transferase, produced significan
Externí odkaz:
https://doaj.org/article/78b74303a98947688ae6aa0db2ad26c0
Autor:
Satoshi Matsumoto, Kouhei Kishida, Shouta Nonoyama, Keiichiro Sakai, Masataka Tsuda, Yuji Nagata, Yoshiyuki Ohtsubo
Publikováno v:
Microbiology Spectrum, Vol 12, Iss 10 (2024)
ABSTRACT ICEKKS102Tn4677 carries a bph operon for the mineralization of polychlorinated biphenyls (PCBs)/biphenyl and belongs to the Tn4371 ICE (integrative and conjugative element) family. In this study, we investigated the role of the traR gene in
Externí odkaz:
https://doaj.org/article/96e99be9c3ca4296a62c57a541379b16
Autor:
Yuji Nagata, Kouhei Kishida, Yoshiyuki Ohtsubo, Keiichiro Sakai, Shouta Nonoyama, Masataka Tsuda
Publikováno v:
Research in microbiology. 171(8)
Bacterial iron-sulfur (Fe-S) clusters are essential cofactors for many metabolic pathways, and Fe-S cluster-containing proteins (Fe-S proteins) regulate the expression of various important genes. However, biosynthesis of such clusters has remained un
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::493fc050e42ffa93cbe931b6909a7009
https://pubmed.ncbi.nlm.nih.gov/32628999
https://pubmed.ncbi.nlm.nih.gov/32628999
Autor:
Koji Kudo, Shouta Nonoyama, Kouhei Kishida, Shotaro Kawahara, Yuji Nagata, Yoshiyuki Ohtsubo, Tim Lukas, Masataka Tsuda
Publikováno v:
Applied and Environmental Microbiology. 85
Conjugative transfer of bacterial plasmids to recipient cells is often mediated by type IV secretion machinery. Experimental investigations into the minimal gene sets required for efficient conjugative transfer suggest that such gene sets are variabl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::479a5a29930e0bc129b1a0343b4d92ac
https://doi.org/10.1128/aem.01850-19
https://doi.org/10.1128/aem.01850-19
Autor:
Kouhei, Kishida, Shouta, Nonoyama, Tim, Lukas, Shotaro, Kawahara, Koji, Kudo, Yuji, Nagata, Yoshiyuki, Ohtsubo, Masataka, Tsuda
Publikováno v:
Appl Environ Microbiol
Conjugative transfer of bacterial plasmids to recipient cells is often mediated by type IV secretion machinery. Experimental investigations into the minimal gene sets required for efficient conjugative transfer suggest that such gene sets are variabl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::a414dcbdff1f27680f7dfa2158841563
https://pubmed.ncbi.nlm.nih.gov/31604768
https://pubmed.ncbi.nlm.nih.gov/31604768
Publikováno v:
Applied and environmental microbiology. 83(16)
Iron and heme play very important roles in various metabolic functions in bacteria, and their intracellular homeostasis is maintained because high concentrations of free forms of these molecules greatly facilitate the Fenton reaction-mediated product
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6a96d49176203096957ebee9a478b9ee
https://pubmed.ncbi.nlm.nih.gov/28625994
https://pubmed.ncbi.nlm.nih.gov/28625994
Autor:
Atsushi Yamazoe, Akira Hosoyama, Nobuyuki Fujita, Yuji Nagata, Yoshiyuki Ohtsubo, Shouta Nonoyama, Fusako Kawai, Mitsuru Numata, Masataka Tsuda, Keiko Tsuchikane
Publikováno v:
Genome Announcements
We determined the complete genome sequence of Sphingopyxis macrogoltabida strain 203N, a polyethylene glycol degrader. Because the PacBio assembly (285× coverage) seemed to be full of nucleotide-level mismatches, the Newbler assembly of MiSeq mate-p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6bd16fd48c26fe2529cd0d613db6885
https://doi.org/10.1128/genomea.00529-16
https://doi.org/10.1128/genomea.00529-16
Autor:
Shouta Nonoyama, Mitsuru Numata, Masataka Tsuda, Nobuyuki Fujita, Fusako Kawai, Yuji Nagata, Yoshiyuki Ohtsubo, Atsushi Yamazoe, Keiko Tsuchikane, Akira Hosoyama
Publikováno v:
Genome Announcements
The complete genome sequence of Sphingopyxis terrae strain 203-1, which is capable of growing on polyethylene glycol, was determined. The genome consisted of a chromosome with a size of 3.98 Mb and a plasmid with a size of 4,328 bp. The strain was de
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ac582f61719ad41aef4fcbe1089167b8
http://europepmc.org/articles/PMC4901234
http://europepmc.org/articles/PMC4901234
Autor:
Kouhei Kishida1,2, Shouta Nonoyama1, Tim Lukas1, Shotaro Kawahara1, Koji Kudo1, Yuji Nagata1, Yoshiyuki Ohtsubo1, Masataka Tsuda1 mtsuda@ige.tohoku.ac.jp
Publikováno v:
Applied & Environmental Microbiology. Dec2019, Vol. 85 Issue 24, p1-13. 13p.
Publikováno v:
Journal of Biotechnology. 228:67-68
Complete genome sequence of Burkholderia caribensis Bcrs1W, isolated from a phenanthrene-degrading mixed culture, was determined. The genomic information of Bcrs1W will be beneficial to elucidating the mechanisms of its positive effects on phenanthre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6091c68992a8332a8d375a862018e1fa
https://doi.org/10.1016/j.jbiotec.2016.04.042
https://doi.org/10.1016/j.jbiotec.2016.04.042