Zobrazeno 1 - 10
of 462
pro vyhledávání: '"Short reads"'
Publikováno v:
Frontiers in Zoology, Vol 21, Iss 1, Pp 1-18 (2024)
Abstract Many questions in biology benefit greatly from the use of a variety of model systems. High-throughput sequencing methods have been a triumph in the democratization of diverse model systems. They allow for the economical sequencing of an enti
Externí odkaz:
https://doaj.org/article/6f7c66c1f1544864849c64ffb990ec76
Autor:
Martin Hölzer, Stephan Fuchs, René Kmiecinski, Kathrin Trappe, Marie Lataretu, Oliver Drechsel
Publikováno v:
F1000Research, Vol 12 (2024)
Background Accurate genome sequences form the basis for genomic surveillance programs, the added value of which was impressively demonstrated during the COVID-19 pandemic by tracing transmission chains, discovering new viral lineages and mutations, a
Externí odkaz:
https://doaj.org/article/908a40cfdc384e6597bd400401c9d545
Publikováno v:
BMC Bioinformatics, Vol 24, Iss 1, Pp 1-15 (2023)
Abstract Background Genomic sequencing reads compressors are essential for balancing high-throughput sequencing short reads generation speed, large-scale genomic data sharing, and infrastructure storage expenditure. However, most existing short reads
Externí odkaz:
https://doaj.org/article/1bc98b6a90b54fee85ab4eafd3217a09
Publikováno v:
Frontiers in Plant Science, Vol 15 (2024)
Pan-genome studies are important for understanding plant evolution and guiding the breeding of crops by containing all genomic diversity of a certain species. Three short-read-based strategies for plant pan-genome construction include iterative indiv
Externí odkaz:
https://doaj.org/article/24a4942237464d10b74cc08ba1169dfc
Publikováno v:
BMC Research Notes, Vol 16, Iss 1, Pp 1-4 (2023)
Abstract Objectives Falcataria moluccana, known locally as Sengon, is a fast-growing legume tree that is commonly planted in community forests of Java Island, Indonesia. However, the plantations face attacks of Boktor stem borer (Xystrocera festiva)
Externí odkaz:
https://doaj.org/article/f92da2a8166f4ad5b1357d21ae16ad31
Autor:
Luca Ermini, Patrick Driguez
Publikováno v:
Cancers, Vol 16, Iss 7, p 1275 (2024)
Cancer is a multifaceted disease arising from numerous genomic aberrations that have been identified as a result of advancements in sequencing technologies. While next-generation sequencing (NGS), which uses short reads, has transformed cancer resear
Externí odkaz:
https://doaj.org/article/c80a0a47414245398acd86241ff766e5
Publikováno v:
Frontiers in Genetics, Vol 14 (2023)
Externí odkaz:
https://doaj.org/article/a47480b11dc54388b922d22e4a9daf69
Autor:
Kristoffer Sahlin
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-27 (2022)
Abstract Read alignment is often the computational bottleneck in analyses. Recently, several advances have been made on seeding methods for fast sequence comparison. We combine two such methods, syncmers and strobemers, in a novel seeding approach fo
Externí odkaz:
https://doaj.org/article/0cee7d1b8fad4cf5ac2ffd833ef576f3
Publikováno v:
Molecular Plant-Microbe Interactions, Vol 36, Iss 2, Pp 131-133 (2023)
Ciborinia camelliae Kohn is a camellia pathogen belonging to family Sclerotiniaceae, infecting only flowers of camellias. To better understand the virulence mechanism in this species, the draft genome sequence of the Italian strain of C. camelliae wa
Externí odkaz:
https://doaj.org/article/3aedc8e3bcc64063a75f388901ccd36b
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-26 (2022)
Abstract Structural variants (SVs) underlie genomic variation but are often overlooked due to difficult detection from short reads. Most algorithms have been tested on humans, and it remains unclear how applicable they are in other organisms. To solv
Externí odkaz:
https://doaj.org/article/e10c28e916664776a1db41862ae1acfe