Zobrazeno 1 - 10
of 1 413
pro vyhledávání: '"Short read"'
Autor:
Lauge Holm Sørensen, Susanne Karlsmose Pedersen, Jacob Dyring Jensen, Niamh Lacy-Roberts, Athina Andrea, Michael S. M. Brouwer, Kees T. Veldman, Yan Lou, Maria Hoffmann, Rene S. Hendriksen
Publikováno v:
mSystems, Vol 9, Iss 9 (2024)
ABSTRACT As antimicrobial resistance (AMR) surveillance shifts to genomics, ensuring the quality of whole-genome sequencing (WGS) data produced across laboratories is critical. Participation in genomic proficiency tests (GPTs) not only increases indi
Externí odkaz:
https://doaj.org/article/ac0fb612ce65470aaed0fa33bfc40c09
Autor:
Isaac Framst, Rebecca M. Wolking, Justin Schonfeld, Nicole Ricker, Janet Beeler-Marfisi, Gabhan Chalmers, Pauline L. Kamath, Grazieli Maboni
Publikováno v:
Frontiers in Veterinary Science, Vol 11 (2024)
IntroductionSpillover events of Mycoplasma ovipneumoniae have devastating effects on the wild sheep populations. Multilocus sequence typing (MLST) is used to monitor spillover events and the spread of M. ovipneumoniae between the sheep populations. M
Externí odkaz:
https://doaj.org/article/0d3b8a1d893a41399cc562193b7c9a10
Publikováno v:
PeerJ, Vol 12, p e17748 (2024)
Background Tandem duplication (TD) is a common and important type of structural variation in the human genome. TDs have been shown to play an essential role in many diseases, including cancer. However, it is difficult to accurately detect TDs due to
Externí odkaz:
https://doaj.org/article/647c96dccc2b4c7c80fb4d7e8ba93ee3
Autor:
Nikolett Szakállas, Barbara K. Barták, Gábor Valcz, Zsófia B. Nagy, István Takács, Béla Molnár
Publikováno v:
Pathology and Oncology Research, Vol 30 (2024)
The large-scale heterogeneity of genetic diseases necessitated the deeper examination of nucleotide sequence alterations enhancing the discovery of new targeted drug attack points. The appearance of new sequencing techniques was essential to get more
Externí odkaz:
https://doaj.org/article/881364eb0fd04ce2abc71adbb856ef8d
Publikováno v:
Frontiers in Microbiology, Vol 15 (2024)
Externí odkaz:
https://doaj.org/article/0bf68de1d6bd4bb78b0723e95b765380
Autor:
Guilherme B. Neumann, Paula Korkuć, Monika Reißmann, Manuel J. Wolf, Katharina May, Sven König, Gudrun A. Brockmann
Publikováno v:
Veterinary Research, Vol 54, Iss 1, Pp 1-7 (2023)
Abstract When resequencing animal genomes, some short reads cannot be mapped to the reference genome and are usually discarded. In this study, unmapped reads from 302 German Black Pied cattle were analyzed to identify potential pathogenic DNA. These
Externí odkaz:
https://doaj.org/article/708b00d4dd314b00b180daccf0b38d19
Autor:
Mariya Lysenkova Wiklander, Elin Övernäs, Johanna Lagensjö, Amanda Raine, Anna Petri, Ann-Christin Wiman, Jon Ramsell, Yanara Marincevic-Zuniga, Henrik Gezelius, Tom Martin, Ignas Bunikis, Sara Ekberg, Rikard Erlandsson, Pontus Larsson, Mai-Britt Mosbech, Susana Häggqvist, Susanne Hellstedt Kerje, Lars Feuk, Adam Ameur, Ulrika Liljedahl, Jessica Nordlund
Publikováno v:
BMC Research Notes, Vol 16, Iss 1, Pp 1-5 (2023)
Abstract Objectives The aim of this data paper is to describe a collection of 33 genomic, transcriptomic and epigenomic sequencing datasets of the B-cell acute lymphoblastic leukemia (ALL) cell line REH. REH is one of the most frequently used cell li
Externí odkaz:
https://doaj.org/article/5165637138d0472e9926245c93331949
Autor:
Yang Pei, Melanie Tanguy, Adam Giess, Abhijit Dixit, Louise C. Wilson, Richard J. Gibbons, Stephen R. F. Twigg, Greg Elgar, Andrew O. M. Wilkie
Publikováno v:
Genes, Vol 15, Iss 7, p 925 (2024)
The identification of structural variants (SVs) in genomic data represents an ongoing challenge because of difficulties in reliable SV calling leading to reduced sensitivity and specificity. We prepared high-quality DNA from 9 parent–child trios, w
Externí odkaz:
https://doaj.org/article/03729fe8e2f841d1a084ff78ef1650ec
Autor:
Laurie Lecomte, Mariann Árnyasi, Anne‐Laure Ferchaud, Matthew Kent, Sigbjørn Lien, Kristina Stenløkk, Florent Sylvestre, Louis Bernatchez, Claire Mérot
Publikováno v:
Evolutionary Applications, Vol 17, Iss 3, Pp n/a-n/a (2024)
Abstract Genomic structural variants (SVs) are now recognized as an integral component of intraspecific polymorphism and are known to contribute to evolutionary processes in various organisms. However, they are inherently difficult to detect and geno
Externí odkaz:
https://doaj.org/article/af2bf1f321854600af8440ea2f99cf5d
Autor:
Zhi-Ping Zhong, Dean Vik, Josephine Z. Rapp, Olivier Zablocki, Heather Maughan, Ben Temperton, Jody W. Deming, Matthew B. Sullivan
Publikováno v:
Microbiome, Vol 11, Iss 1, Pp 1-18 (2023)
Abstract Background Climate change threatens Earth’s ice-based ecosystems which currently offer archives and eco-evolutionary experiments in the extreme. Arctic cryopeg brine (marine-derived, within permafrost) and sea ice brine, similar in subzero
Externí odkaz:
https://doaj.org/article/90bc24c2f46849efa3163e287a76892f