Zobrazeno 1 - 10
of 4 183
pro vyhledávání: '"Shoresh, N"'
Publikováno v:
Nucl.Phys.Proc.Suppl.129:185-187,2004
The O(a^2) contributions to the chiral effective Lagrangian for lattice QCD with Wilson fermions are constructed. The results are generalized to partially quenched QCD with Wilson fermions as well as to the "mixed'' lattice theory with Wilson sea qua
Externí odkaz:
http://arxiv.org/abs/hep-lat/0309033
Publikováno v:
Phys.Rev.D67:114505,2003
We discuss simulations with different lattice Dirac operators for sea and valence quarks. A goal of such a "mixed" action approach is to probe deeper the chiral regime of QCD by enabling simulations with light valence quarks. This is achieved by usin
Externí odkaz:
http://arxiv.org/abs/hep-lat/0210050
Autor:
Sharpe, S., Shoresh, N.
Publikováno v:
Nucl.Phys.Proc.Suppl. 83 (2000) 968-970
We discuss the importance of using partially quenched theories with three degenerate quarks for extrapolating to QCD, and present some relevant results from chiral perturbation theory.
Comment: LATTICE99 talk. 3 pages, 2 figures. Uses epsf and e
Comment: LATTICE99 talk. 3 pages, 2 figures. Uses epsf and e
Externí odkaz:
http://arxiv.org/abs/hep-lat/9909090
Autor:
Rupak, G., Shoresh, N.
I outline the effective field theory (EFT) calculation of nucleon-nucleon scattering which was recently carried out to next-to-next-to-leading order (NNLO) by Noam Shoresh and myself. In this calculation only potential pion contributions are included
Externí odkaz:
http://arxiv.org/abs/nucl-th/9906077
Autor:
Poulsen BE, Warrier T, Barkho S, Bagnall J, Romano KP, White T, Yu X, Kawate T, Nguyen PH, Raines K, Ferrara K, Golas A, Fitzgerald M, Boeszoermenyi A, Kaushik V, Serrano-Wu M, Shoresh N, Hung DT
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2024 Mar 16. Date of Electronic Publication: 2024 Mar 16.
Autor:
Hecht V; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America., Dong K; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America., Rajesh S; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America., Shpilker P; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America., Wekhande S; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America., Shoresh N; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Publikováno v:
PLoS computational biology [PLoS Comput Biol] 2023 Oct 20; Vol. 19 (10), pp. e1011568. Date of Electronic Publication: 2023 Oct 20 (Print Publication: 2023).
Autor:
Rozowsky J; Section on Biomedical Informatics and Data Science, Yale University, New Haven, CT, USA; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Gao J; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Borsari B; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain., Yang YT; Institute of Science and Technology for Brain-Inspired Intelligence; MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence; MOE Frontiers Center for Brain Science, Fudan University, Shanghai 200433, China; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Galeev T; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Gürsoy G; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Epstein CB; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Xiong K; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Xu J; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Li T; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Liu J; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Yu K; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA., Berthel A; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Chen Z; Department of Statistics and Data Science, Yale University, New Haven, CT, USA., Navarro F; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Sun MS; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Wright J; Institute of Cancer Research, London, UK., Chang J; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Cameron CJF; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Shoresh N; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Gaskell E; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Drenkow J; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Adrian J; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Aganezov S; Departments of Computer Science and Biology, Johns Hopkins University, Baltimore, MD, USA., Aguet F; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Balderrama-Gutierrez G; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA., Banskota S; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Corona GB; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Chee S; Ludwig Institute for Cancer Research, University of California, San Diego, La Jolla, CA, USA., Chhetri SB; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Cortez Martins GC; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Danyko C; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Davis CA; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Farid D; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Farrell NP; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Gabdank I; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Gofin Y; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA., Gorkin DU; Ludwig Institute for Cancer Research, University of California, San Diego, La Jolla, CA, USA., Gu M; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Hecht V; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Hitz BC; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Issner R; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Jiang Y; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Kirsche M; Departments of Computer Science and Biology, Johns Hopkins University, Baltimore, MD, USA., Kong X; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Lam BR; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Li S; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Li B; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Li X; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA., Lin KZ; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Luo R; Department of Computer Science, The University of Hong Kong, Hong Kong, CHN., Mackiewicz M; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Meng R; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Moore JE; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA., Mudge J; European Bioinformatics Institute, Cambridge, Cambridgeshire, GB., Nelson N; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Nusbaum C; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Popov I; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Pratt HE; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA., Qiu Y; Ludwig Institute for Cancer Research, University of California, San Diego, La Jolla, CA, USA., Ramakrishnan S; Departments of Computer Science and Biology, Johns Hopkins University, Baltimore, MD, USA., Raymond J; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Salichos L; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA; Department of Biological and Chemical Sciences, New York Institute of Technology, Old Westbury, NY, USA., Scavelli A; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Schreiber JM; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Sedlazeck FJ; Departments of Computer Science and Biology, Johns Hopkins University, Baltimore, MD, USA; Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA., See LH; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Sherman RM; Departments of Computer Science and Biology, Johns Hopkins University, Baltimore, MD, USA., Shi X; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Shi M; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Sloan CA; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Strattan JS; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Tan Z; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Tanaka FY; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Vlasova A; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain; Comparative Genomics Group, Life Science Programme, Barcelona Supercomputing Centre, Barcelona, Spain; Institute of Research in Biomedicine, Barcelona, Spain., Wang J; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Werner J; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Williams B; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA., Xu M; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Yan C; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Yu L; Institute of Cancer Research, London, UK., Zaleski C; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Zhang J; Department of Computer Science, University of California, Irvine, Irvine, CA, USA., Ardlie K; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Cherry JM; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Mendenhall EM; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Noble WS; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Weng Z; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA., Levine ME; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Pathology, Yale University School of Medicine, New Haven, CT, USA., Dobin A; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Wold B; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA., Mortazavi A; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA., Ren B; Ludwig Institute for Cancer Research, University of California, San Diego, La Jolla, CA, USA., Gillis J; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Department of Physiology, University of Toronto, Toronto, ON, Canada., Myers RM; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Snyder MP; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Choudhary J; Institute of Cancer Research, London, UK., Milosavljevic A; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA., Schatz MC; Departments of Computer Science and Biology, Johns Hopkins University, Baltimore, MD, USA; Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. Electronic address: mschatz@cs.jhu.edu., Bernstein BE; Broad Institute of MIT and Harvard, Cambridge, MA, USA; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. Electronic address: Bradley_Bernstein@dfci.harvard.edu., Guigó R; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain; Universitat Pompeu Fabra, Barcelona, Catalonia, Spain. Electronic address: roderic.guigo@crg.eu., Gingeras TR; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. Electronic address: gingeras@cshl.edu., Gerstein M; Section on Biomedical Informatics and Data Science, Yale University, New Haven, CT, USA; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA; Department of Statistics and Data Science, Yale University, New Haven, CT, USA; Department of Computer Science, Yale University, New Haven, CT, USA. Electronic address: mark@gersteinlab.org.
Publikováno v:
Cell [Cell] 2023 Mar 30; Vol. 186 (7), pp. 1493-1511.e40.
Autor:
Hu Y; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA., Ma S; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA.; Current address: Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029 USA., Kartha VK; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA., Duarte FM; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA., Horlbeck M; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA., Zhang R; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA., Shrestha R; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA., Labade A; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA., Kletzien H; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA.; Paul F. Glenn Center for the Biology of Aging, Harvard Medical School, Boston, MA 02115., Meliki A; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA., Castillo A; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA., Durand N; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA., Mattei E; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA., Anderson LJ; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA., Tay T; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA., Earl AS; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA., Shoresh N; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA., Epstein CB; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA., Wagers A; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA.; Paul F. Glenn Center for the Biology of Aging, Harvard Medical School, Boston, MA 02115., Buenrostro JD; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, 02142 USA.; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2023 Mar 29. Date of Electronic Publication: 2023 Mar 29.
Autor:
Woolley AE; Division of Infectious Diseases, Brigham and Women's Hospital, Boston, Massachusetts, USA.; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA., Dryden-Peterson S; Division of Infectious Diseases, Brigham and Women's Hospital, Boston, Massachusetts, USA.; Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.; Botswana Harvard AIDS Institute, Boston, Massachusetts, USA., Kim A; Division of Infectious Diseases, Brigham and Women's Hospital, Boston, Massachusetts, USA., Naz-McLean S; Division of Infectious Diseases, Brigham and Women's Hospital, Boston, Massachusetts, USA., Kelly C; Division of Infectious Diseases, Brigham and Women's Hospital, Boston, Massachusetts, USA., Laibinis HH; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA., Bagnall J; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA., Livny J; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA., Ma P; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA., Orzechowski M; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA., Gomez J; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA., Shoresh N; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA., Gabriel S; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA., Hung DT; Division of Infectious Diseases, Brigham and Women's Hospital, Boston, Massachusetts, USA.; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Department of Molecular Biology and Center for Computational and Integrative Biology, Massachusetts General Hospital, Boston, Massachusetts, USA., Cosimi LA; Division of Infectious Diseases, Brigham and Women's Hospital, Boston, Massachusetts, USA.; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Publikováno v:
Open forum infectious diseases [Open Forum Infect Dis] 2022 Oct 05; Vol. 9 (11), pp. ofac505. Date of Electronic Publication: 2022 Oct 05 (Print Publication: 2022).