Comparison of Sequences of cDNA Clones Obtained from Oligo-capping cDNA Libraries with Those from UniGene

Autor: Tetsuo Nishikawa, Yuri Kawai, Ai Wakamatsu, Sumio Sugano, Kaoru Saito, Takao Isogai, Toshio Ota, Shizuko Ishii, Yutaka Suzuki, Masashi Ozawa, Junichi Yamamoto

Publikováno v: DNA Research. 8:255-262

We compared in detail the characteristics of the sequences of the cDNA clones obtained by the oligo-capping method (oligo-capping clones) with that of the sequences in the UniGene database. To compare the completeness of the sequences, three new vari

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b2a500a191b343266c576f811ce87ec3
https://doi.org/10.1093/dnares/8.6.255

Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes

Autor: Yuko Isono, Rie Otsuka, Shinichi Ishida, Takahiro Yoneyama, Keiichi Nagai, Riu Yamashita, Tomoyasu Sugiyama, Asako Takahashi-Fujii, Toshio Ota, Takahide Yokoi, Takao Isogai, Hiroyuki Wakaguri, Tomo-o Tanase, Yutaka Suzuki, Hiroshi Kondo, Tadashi Ishibashi, Katsuhiro Kanda, Shizuko Ishii, Masako Wagatsuma, Ai Wakamatsu, Sumio Sugano, Hisashi Kikuchi, Katsuki Tsuritani, Mitsuo Sekine, Junichi Yamamoto, Tetsuo Nishikawa, Kaoru Saito, Ryotaro Irie, Katsuji Murakawa, Norihiro Kushida, Kouichi Kimura, Kenta Nakai

Publikováno v: Genome research. 16(1)

By analyzing 1,780,295 5′-end sequences of human full-length cDNAs derived from 164 kinds of oligo-cap cDNA libraries, we identified 269,774 independent positions of transcriptional start sites (TSSs) for 14,628 human RefSeq genes. These TSSs were

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::724545534832eb80b6aa5703a5323484
https://pubmed.ncbi.nlm.nih.gov/16344560

Complete sequencing and characterization of 21,243 full-length human cDNAs

Autor: Yoko Yoshikawa, Hiroyo Kodaira, Akio Sugiyama, Kaoru Saito, Nobuo Nomura, Tsutomu Fujiwara, Naoko Katsuta, Shogo Moriya, Mitsuo Sekine, Tomoyasu Sugiyama, Hisatsugu Yuuki, Bunsei Kawakami, Sachiko Okamoto, Junichi Yamamoto, Koji Watanabe, Satoshi Aotsuka, Tadashi Satoh, Takami Komatsu, Yoshihiro Ohmori, Takao Iwayanagi, Akihiro Senoh, Machiko Tanikawa, Yasuko Ikema, Tomoko Hotuta, Takahide Yokoi, Naokazu Sasaki, Ryotaro Irie, Tatsunari Nishi, Sakae Togiya, Hirokazu Wakebe, Tadashi Senba, Yoshihiro Goto, Hiroshi Matsunawa, Yuko Terashima, Hiroshi Kondo, Katsue Yamada, Tetsuji Otsuki, Yasuhiko Masuho, Misato Morinaga, Hiroshi Mizoguchi, Makoto Takemoto, Asako Takahashi-Fujii, Kumiko Kamihara, Kiyomi Nakagawa, Saori Noguchi, Osamu Suzuki, Miho Arita, Susumu Hiraoka, Yuko Shirai, Kyoka Matsumura, Takeshi Watanabe, Kumi Abe, Hiromi Inagaki, Hiroyuki Sato, Manabu Watanabe, Ken Ninomiya, Yoshiyuki Chiba, Yusuke Nakamura, Shoko Itakura, Hiroko Momiyama, Emiko Kikkawa, Yuri Kawai, Yoshiko Nomura, Yoshie Nakajima, Hisashi Kikuchi, Manabu Kimata, Noriko Satoh, Yukiko Takahashi, Shinichi Ishida, Toshio Ota, Sachiko Takami, Tetsushi Yada, Atsushi Oshima, Reiko Hara, Keiko Shigeta, Takeshi Hikiji, Tetsuo Nishikawa, Hiroyuki Tanai, Satoshi Nakagawa, Ayako Kawabata, Kiyoshi Fujimori, Tadashi Ishibashi, Yoshiko Kaku, Yutaka Suzuki, Keiichi Nagai, Kouichi Ozaki, Takae Mizuno, Susumu Watanabe, Katsuhiro Kanda, Kazuha Takeuchi, Tomo-o Tanase, Katsuhiko Murakami, Masahide Sasaki, Makoto Yosida, Yasuhito Fukuzumi, Takehiko Hosoiri, Tomoko Itoh, Toshikazu Shibahara, Masaya Obayashi, Megumi Komiyama, Sumiyo Takiguchi, Koji Hayashi, Osamu Ohara, Hiroyuki Tashiro, Kazuomi Sato, Hiroto Hara, Makoto Yamazaki, Naoko Kobatake, Toshihiro Tanaka, Akiko Shiratori, Sanae Sano, Takuma Kawakami, Koji Okumura, Yoshifumi Fujimori, Masaaki Yamazaki, Kenji Nagahari, Sumio Sugano, Kouichi Kimura, Junko Kusano, Yukio Ono, Hiroaki Sudo, Takahiro Nagase, Fukuyo Komai, Yuko Isono, Haretsugu Hishigaki, Junko Mizushima-Sugano, Masako Wagatsuma, Fumio Shimizu, Hiroshi Makita, Yuka Fujii, Tatsuo Ichihara, Yuhi Omura, Tomohiro Yasuda, Kenta Nakai, Keiichi Kanehori, Shizuko Ishii, Takushi Togashi, Rie Okitani, Hiromichi Yamashita, Katsuji Murakawa, Akira Tanigami, Ai Wakamatsu, Namiko Shiohata, Kaoru Musashino, Ayako Kumagai, Toshihide Ono, Motoji Watanabe, Hiroko Hata, Yoshitaka Nakamura, Takako Furuya, Masaaki Oyama, Takao Isogai, Nobuyuki Imose, Masanori Sugawara, Makiko Takahashi, Riu Yamashita, Maasa Hirao

Publikováno v: Nature genetics. 36(1)

As a base for human transcriptome and functional genomics, we created the "full-length long Japan" (FLJ) collection of sequenced human cDNAs. We determined the entire sequence of 21,243 selected clones and found that 14,490 cDNAs (10,897 clusters) we

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1423d4e4322c993cbee2219dafdff70a
https://pubmed.ncbi.nlm.nih.gov/14702039

Database and analysis system for cDNA clones obtained from full-length enriched cDNA libraries

Autor: Tetsuo, Nishikawa, Toshio, Ota, Yuri, Kawai, Shizuko, Ishii, Kaoru, Saito, Jun-ichi, Yamamoto, Ai, Wakamatsu, Masashi, Ozawa, Yutaka, Suzuki, Sumio, Sugano, Takao, Isogai

Publikováno v: In silico biology. 2(1)

We have developed an efficient sequence-analysis system and a database system for clones obtained from full-length enriched cDNA libraries made by using the oligo-capping method. We developed a semi-automatic analysis system for 5'- and 3'-end sequen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::d8b6c5e19de09e3f6008cd7640980c5e
https://pubmed.ncbi.nlm.nih.gov/11808872