Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics.

Autor: Voogdt CGP; Genome Biology Unit, EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany; Structural and Computational Biology Unit, EMBL, Heidelberg, Germany., Tripathi S; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA., Bassler SO; Genome Biology Unit, EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany; Faculty of Biosciences, Heidelberg University, Grabengasse 1, 69117 Heidelberg, Germany., McKeithen-Mead SA; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA., Guiberson ER; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA., Koumoutsi A; Genome Biology Unit, EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany., Bravo AM; Department of Fundamental Microbiology, University of Lausanne, 1015 Lausanne, Switzerland., Buie C; Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Zimmermann M; Structural and Computational Biology Unit, EMBL, Heidelberg, Germany., Sonnenburg JL; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA., Typas A; Genome Biology Unit, EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany; Structural and Computational Biology Unit, EMBL, Heidelberg, Germany. Electronic address: typas@embl.de., Deutschbauer AM; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. Electronic address: amdeutschbauer@lbl.gov., Shiver AL; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA. Electronic address: ashiver@stanford.edu., Huang KC; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA. Electronic address: kchuang@stanford.edu.

Publikováno v: Cell reports [Cell Rep] 2024 Jan 23; Vol. 43 (1), pp. 113519. Date of Electronic Publication: 2023 Dec 23.

Intraoperative Challenges in Hand Surgery.

Autor: Wallace DR; Medical College of Georgia at Augusta University, 1120 15th Street, Augusta, GA 30912, USA. Electronic address: dowallace@augusta.edu., Shiver AL; Medical College of Georgia at Augusta University, 1120 15th Street, Augusta, GA 30912, USA., Whitehead J; Medical College of Georgia at Augusta University, 1120 15th Street, Augusta, GA 30912, USA., Wood M; Medical College of Georgia at Augusta University, 1120 15th Street, Augusta, GA 30912, USA., Snoddy MC; Medical College of Georgia at Augusta University, 1120 15th Street, Augusta, GA 30912, USA.

Publikováno v: The Orthopedic clinics of North America [Orthop Clin North Am] 2024 Jan; Vol. 55 (1), pp. 123-128. Date of Electronic Publication: 2023 Sep 14.

A mutant fitness compendium in Bifidobacteria reveals molecular determinants of colonization and host-microbe interactions.

Autor: Shiver AL; Department of Bioengineering, Stanford University, Stanford CA 94305, USA., Sun J; Department of Bioengineering, Stanford University, Stanford CA 94305, USA., Culver R; Department of Genetics, Stanford University, Stanford CA 94305, USA., Violette A; Department of Bioengineering, Stanford University, Stanford CA 94305, USA., Wynter C; Department of Bioengineering, Stanford University, Stanford CA 94305, USA., Nieckarz M; Department of Molecular Biology and Laboratory for Molecular Infection Medicine Sweden (MIMS), Umeå Centre for Microbial Research (UCMR), Umeå University, Umeå, SE-90187, Sweden., Mattiello SP; Department of Veterinary and Biomedical Sciences, South Dakota State University, Brookings, SD, 57007, USA.; College of Mathematics and Science, The University of Tennessee Southern, Pulaski TN 38478, USA., Sekhon PK; Department of Veterinary and Biomedical Sciences, South Dakota State University, Brookings, SD, 57007, USA.; Department of Veterinary Pathobiology, Oklahoma State University, Stillwater, OK, 74074, USA., Friess L; School of Microbiology, University College Cork, Ireland.; APC Microbiome Ireland, University College Cork, Ireland., Carlson HK; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Wong D; Department of Applied Physics, Stanford University, Stanford CA 94305, USA., Higginbottom S; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Weglarz M; Stanford Shared FACS Facility, Center for Molecular and Genetic Medicine, Stanford University, Stanford, California, USA., Wang W; Department of Chemical Engineering, Stanford University, Stanford CA 94305, USA., Knapp BD; Biophysics Program, Stanford University, Stanford, CA, USA., Guiberson E; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Sanchez J; Chan-Zuckerberg Biohub, San Francisco, CA 94158., Huang PH; Department of Mechanical Engineering, Laboratory for Energy and Microsystems Innovation, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, 02139, MA, USA., Garcia PA; Department of Mechanical Engineering, Laboratory for Energy and Microsystems Innovation, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, 02139, MA, USA., Buie CR; Department of Mechanical Engineering, Laboratory for Energy and Microsystems Innovation, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, 02139, MA, USA., Good B; Department of Applied Physics, Stanford University, Stanford CA 94305, USA., DeFelice B; Chan-Zuckerberg Biohub, San Francisco, CA 94158., Cava F; Department of Molecular Biology and Laboratory for Molecular Infection Medicine Sweden (MIMS), Umeå Centre for Microbial Research (UCMR), Umeå University, Umeå, SE-90187, Sweden., Scaria J; Department of Veterinary and Biomedical Sciences, South Dakota State University, Brookings, SD, 57007, USA.; Department of Veterinary Pathobiology, Oklahoma State University, Stillwater, OK, 74074, USA., Sonnenburg J; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Sinderen DV; School of Microbiology, University College Cork, Ireland.; APC Microbiome Ireland, University College Cork, Ireland., Deutschbauer AM; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.; Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA., Huang KC; Department of Bioengineering, Stanford University, Stanford CA 94305, USA.; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.; Chan-Zuckerberg Biohub, San Francisco, CA 94158.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 Aug 29. Date of Electronic Publication: 2023 Aug 29.

Intramedullary Threaded Nail Fixation Versus Plate and Screw Construct in Metacarpal Neck Fractures: A Biomechanical Study.

Autor: Wallace DR; From Medical College of Georgia at Augusta University, Augusta, GA., Shiver AL, Pulliam SK, Byrd BM, McGee-Lawrence ME, Snoddy MC

Publikováno v: The Journal of the American Academy of Orthopaedic Surgeons [J Am Acad Orthop Surg] 2023 Jun 01; Vol. 31 (11), pp. e516-e522. Date of Electronic Publication: 2023 Apr 14.

Design, construction, and in vivo augmentation of a complex gut microbiome.

Autor: Cheng AG; Department of Gastroenterology & Hepatology, Stanford School of Medicine, Stanford, CA 94305, USA. Electronic address: alicec2@stanford.edu., Ho PY; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA., Aranda-Díaz A; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA., Jain S; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA., Yu FB; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA., Meng X; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA., Wang M; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA., Iakiviak M; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA., Nagashima K; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA., Zhao A; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA., Murugkar P; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA., Patil A; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA., Atabakhsh K; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA., Weakley A; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA., Yan J; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA., Brumbaugh AR; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA., Higginbottom S; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA., Dimas A; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA., Shiver AL; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA., Deutschbauer A; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA., Neff N; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA., Sonnenburg JL; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA., Huang KC; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA. Electronic address: kchuang@stanford.edu., Fischbach MA; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA; ChEM-H Institute, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford University, Stanford, CA 94305, USA. Electronic address: fischbach@fischbachgroup.org.

Publikováno v: Cell [Cell] 2022 Sep 15; Vol. 185 (19), pp. 3617-3636.e19. Date of Electronic Publication: 2022 Sep 06.