Zobrazeno 1 - 10
of 335
pro vyhledávání: '"Shin-Ichi Nakano"'
Autor:
Maria-Cecilia Chiriac, Paul-Adrian Bulzu, Adrian-Stefan Andrei, Yusuke Okazaki, Shin-ichi Nakano, Markus Haber, Vinicius Silva Kavagutti, Paul Layoun, Rohit Ghai, Michaela M. Salcher
Publikováno v:
Microbiome, Vol 10, Iss 1, Pp 1-21 (2022)
Abstract Background The increased use of metagenomics and single-cell genomics led to the discovery of organisms from phyla with no cultivated representatives and proposed new microbial lineages such as the candidate phyla radiation (CPR or Patesciba
Externí odkaz:
https://doaj.org/article/20410fd6579e4d85af0fc71d997f1510
Publikováno v:
mSystems, Vol 7, Iss 4 (2022)
ABSTRACT Reconstruction of metagenome-assembled genomes (MAGs) has become a fundamental approach in microbial ecology. However, a MAG is hardly complete and overlooks genomic microdiversity because metagenomic assembly fails to resolve microvariants
Externí odkaz:
https://doaj.org/article/3d10c71104294b15b7a786db058338b6
Autor:
Yusuke Okazaki, Shohei Fujinaga, Michaela M. Salcher, Cristiana Callieri, Atsushi Tanaka, Ayato Kohzu, Hideo Oyagi, Hideyuki Tamaki, Shin-ichi Nakano
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-15 (2021)
Abstract Background Freshwater ecosystems are inhabited by members of cosmopolitan bacterioplankton lineages despite the disconnected nature of these habitats. The lineages are delineated based on > 97% 16S rRNA gene sequence similarity, but their in
Externí odkaz:
https://doaj.org/article/916a84e37d764ca0acc0770e8a7dd7ad
Autor:
Satoshi Hiraoka, Yusuke Okazaki, Mizue Anda, Atsushi Toyoda, Shin-ichi Nakano, Wataru Iwasaki
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-10 (2019)
Our knowledge of DNA methylation systems in prokaryotes is mostly limited to those of culturable microbes. Here, Hiraoka et al. analyse DNA methylation patterns in metagenomic data from a microbial community, revealing new methylated motifs and exper
Externí odkaz:
https://doaj.org/article/9772b91b850a477abf6a76b5c52a377d
Autor:
Maliheh Mehrshad, Michaela M Salcher, Yusuke Okazaki, Shin-ichi Nakano, Karel Šimek, Adrian-Stefan Andrei, Rohit Ghai
Publikováno v:
Microbiome, Vol 6, Iss 1, Pp 1-13 (2018)
Abstract Background Representatives of the phylum Chloroflexi, though reportedly highly abundant in the extensive deep water habitats of both marine (SAR202 up to 30% of total prokaryotes) and freshwater (CL500-11 up to 26% of total prokaryotes), rem
Externí odkaz:
https://doaj.org/article/f77745a100c64040bc715f148cc9b9e8
Autor:
Indranil Mukherjee, Yoshikuni Hodoki, Yusuke Okazaki, Shohei Fujinaga, Kako Ohbayashi, Shin-ichi Nakano
Publikováno v:
Frontiers in Microbiology, Vol 10 (2019)
Kinetoplastid flagellates are generally abundant in the deep sea and recently they were even found to be dominant in the hypolimnion of a deep freshwater lake. Therefore, to understand the distribution of kinetoplastids in deep freshwater lakes, we h
Externí odkaz:
https://doaj.org/article/7bc051dc8f0648b18b101bb004934a7a
Publikováno v:
Royal Society Open Science, Vol 6, Iss 1 (2019)
Zooplankton species have different feeding habits, but the diversity of their food resources and the factors governing them are still largely unknown. We here estimated the differences in the trophic niche breadths of dominant zooplankton species in
Externí odkaz:
https://doaj.org/article/48a4083990724b63a0421651a5636ca2
Publikováno v:
Frontiers in Microbiology, Vol 9 (2018)
CL500-11 (phylum Chloroflexi) is one of the most ubiquitous and abundant bacterioplankton lineages in deep freshwater lakes inhabiting the oxygenated hypolimnion. While metagenomics predicted possible eco-physiological characteristics of this uncultu
Externí odkaz:
https://doaj.org/article/ecfa060d04c64262a658f2dcb19d1992
Publikováno v:
Journal of Ecology and Environment, Vol 37, Iss 4, Pp 225-229 (2014)
Feeding behavior of Temora turbinata was investigated through laboratory experiments with special emphasis on its food preference and consequent clearance rate on diatom and microbial components given as common natural food assemblage of coastal ar
Externí odkaz:
https://doaj.org/article/c8907c6d1b0b46d0a36bfe2ba3d7ac86
Publikováno v:
Journal of Limnology, Vol 69, Iss 2, Pp 209-216 (2010)
Spatial distribution and the diet composition of Asplanchna species were studied in 18 water bodies in Matsuyama, Japan. The abundance of Asplanchna and other rotifers, crustaceans, phytoplankton and microbial plankton, together with basic environmen
Externí odkaz:
https://doaj.org/article/6b74ea06a5d9429797f5bd90374a4306