Zobrazeno 1 - 10
of 30
pro vyhledávání: '"Shijie C Zheng"'
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-31 (2023)
Abstract Background RNA velocity analysis of single cells offers the potential to predict temporal dynamics from gene expression. In many systems, RNA velocity has been observed to produce a vector field that qualitatively reflects known features of
Externí odkaz:
https://doaj.org/article/dc30025113454b1599393ecde374f1f7
Autor:
Qi Luo, Varun B. Dwaraka, Qingwen Chen, Huige Tong, Tianyu Zhu, Kirsten Seale, Joseph M. Raffaele, Shijie C. Zheng, Tavis L. Mendez, Yulu Chen, Natalia Carreras, Sofina Begum, Kevin Mendez, Sarah Voisin, Nir Eynon, Jessica A. Lasky-Su, Ryan Smith, Andrew E. Teschendorff
Publikováno v:
Genome Medicine, Vol 15, Iss 1, Pp 1-24 (2023)
Abstract Background Changes in cell-type composition of tissues are associated with a wide range of diseases and environmental risk factors and may be causally implicated in disease development and progression. However, these shifts in cell-type frac
Externí odkaz:
https://doaj.org/article/b05b81a3490b4576b2b9a29d275708ee
Autor:
Shijie C. Zheng, Genevieve Stein-O’Brien, Jonathan J. Augustin, Jared Slosberg, Giovanni A. Carosso, Briana Winer, Gloria Shin, Hans T. Bjornsson, Loyal A. Goff, Kasper D. Hansen
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-27 (2022)
Abstract Background The cell cycle is a highly conserved, continuous process which controls faithful replication and division of cells. Single-cell technologies have enabled increasingly precise measurements of the cell cycle both as a biological pro
Externí odkaz:
https://doaj.org/article/c61a7527742f4114b80adbbd1eb9bb11
Autor:
Christopher Wilks, Shijie C. Zheng, Feng Yong Chen, Rone Charles, Brad Solomon, Jonathan P. Ling, Eddie Luidy Imada, David Zhang, Lance Joseph, Jeffrey T. Leek, Andrew E. Jaffe, Abhinav Nellore, Leonardo Collado-Torres, Kasper D. Hansen, Ben Langmead
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-40 (2021)
Abstract We present recount3, a resource consisting of over 750,000 publicly available human and mouse RNA sequencing (RNA-seq) samples uniformly processed by our new Monorail analysis pipeline. To facilitate access to the data, we provide the recoun
Externí odkaz:
https://doaj.org/article/8ffd406a24644e9286dbf6b7448b3e96
Autor:
Chenglong You, Sijie Wu, Shijie C. Zheng, Tianyu Zhu, Han Jing, Ken Flagg, Guangyu Wang, Li Jin, Sijia Wang, Andrew E. Teschendorff
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020)
Smoking-associated DNA methylation changes in whole blood have been reported by many EWAS. Here, the authors use a cell-type deconvolution algorithm to identify cell-type specific DNA methylation signals in seven EWAS, identifying lineage-specific sm
Externí odkaz:
https://doaj.org/article/d35fa67c57af48bc9a217686903a42d6
Autor:
Shijie C. Zheng
Publikováno v:
Epigenetic Cancer Therapy ISBN: 9780323913676
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::201fc9b8b2f226b1cdfaa1b47acb9a93
https://doi.org/10.1016/b978-0-323-91367-6.00002-7
https://doi.org/10.1016/b978-0-323-91367-6.00002-7
RNA velocity analysis of single cells promises to predict temporal dynamics from gene expression. Indeed, in many systems, it has been observed that RNA velocity produces a vector field that qualitatively reflects known features of the system. Despit
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f6576d7c5e86bc3d13084e3827bac465
https://doi.org/10.1101/2022.06.19.494717
https://doi.org/10.1101/2022.06.19.494717
Autor:
Jinxi Li, James D. Glover, Haiguo Zhang, Meifang Peng, Jingze Tan, Chandana Basu Mallick, Dan Hou, Yajun Yang, Sijie Wu, Yu Liu, Qianqian Peng, Shijie C. Zheng, Edie I. Crosse, Alexander Medvinsky, Richard A. Anderson, Helen Brown, Ziyu Yuan, Shen Zhou, Yanqing Xu, John P. Kemp, Yvonne Y.W. Ho, Danuta Z. Loesch, Lizhong Wang, Yingxiang Li, Senwei Tang, Xiaoli Wu, Robin G. Walters, Kuang Lin, Ruogu Meng, Jun Lv, Jonathan M. Chernus, Katherine Neiswanger, Eleanor Feingold, David M. Evans, Sarah E. Medland, Nicholas G. Martin, Seth M. Weinberg, Mary L. Marazita, Gang Chen, Zhengming Chen, Yong Zhou, Michael Cheeseman, Lan Wang, Li Jin, Denis J. Headon, Sijia Wang
Publikováno v:
Li, J, Glover, J D, Zhang, H, Peng, M, Tan, J, Mallick, C B, Hou, D, Yang, Y, Wu, S, Liu, Y, Peng, Q, Zheng, S C, Crosse, E I, Medvinsky, A, Anderson, R A, Brown, H, Yuan, Z, Zhou, S, Xu, Y, Kemp, J P, Ho, Y Y W, Loesch, D Z, Wang, L, Li, Y, Tang, S, Wu, X, Walters, R G, Lin, K, Meng, R, Lv, J, Chernus, J M, Neiswanger, K, Feingold, E, Evans, D M, Medland, S E, Martin, N G, Weinberg, S M, Marazita, M L, Chen, G, Chen, Z, Zhou, Y, Cheeseman, M, Wang, L, Jin, L, Headon, D J & Wang, S 2022, ' Limb development genes underlie variation in human fingerprint patterns ', Cell, vol. 185, no. 1, 95-112.e18, pp. 95-112.e18 . https://doi.org/10.1016/j.cell.2021.12.008
Cell
Cell
Summary Fingerprints are of long-standing practical and cultural interest, but little is known about the mechanisms that underlie their variation. Using genome-wide scans in Han Chinese cohorts, we identified 18 loci associated with fingerprint type
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5152f3daab18d02ee2c22bebc93c97c7
https://www.pure.ed.ac.uk/ws/files/248655297/1_s2.0_S009286742101446X_main.pdf
https://www.pure.ed.ac.uk/ws/files/248655297/1_s2.0_S009286742101446X_main.pdf
Autor:
Leonardo Collado-Torres, Jeffrey T. Leek, Brad Solomon, Kasper D. Hansen, Feng Yong Chen, David Zhang, Jonathan P. Ling, Abhinav Nellore, Rone Charles, Ben Langmead, Shijie C Zheng, Eddie Luidy Imada, Christopher Wilks, Andrew E. Jaffe, Lance Joseph
Publikováno v:
Genome Biology
Genome Biology, Vol 22, Iss 1, Pp 1-40 (2021)
Genome Biology, Vol 22, Iss 1, Pp 1-40 (2021)
We present recount3, a resource consisting of over 750,000 publicly available human and mouse RNA sequencing (RNA-seq) samples uniformly processed by our new Monorail analysis pipeline. To facilitate access to the data, we provide the recount3 and sn
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fb4a31376672301790287d357997c1ff
https://doi.org/10.1186/s13059-021-02533-6
https://doi.org/10.1186/s13059-021-02533-6
Autor:
Shijie C Zheng, Kasper D. Hansen, Jared Slosberg, Briana Winer, Genevieve Stein-O’Brien, Gloria Shin, Loyal A. Goff, Hans T. Bjornsson, Jonathan Augustin, Giovanni A. Carosso
BackgroundThe cell cycle is a highly conserved, continuous process which controls faithful replication and division of cells. Single-cell technologies have enabled increasingly precise measurements of the cell cycle both as a biological process of in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::782219c4cc6619c33b97d77dc4ace884
https://doi.org/10.1101/2021.04.06.438463
https://doi.org/10.1101/2021.04.06.438463