Zobrazeno 1 - 10
of 48
pro vyhledávání: '"Shiaw-Pyng Yang"'
Autor:
Scott W Doniger, Hyun Seok Kim, Devjanee Swain, Daniella Corcuera, Morgan Williams, Shiaw-Pyng Yang, Justin C Fay
Publikováno v:
PLoS Genetics, Vol 4, Iss 8, p e1000183 (2008)
The abundance and identity of functional variation segregating in natural populations is paramount to dissecting the molecular basis of quantitative traits as well as human genetic diseases. Genome sequencing of multiple organisms of the same species
Externí odkaz:
https://doaj.org/article/4e6b60b1d30341e4978d72277f47fa5a
Autor:
Devin P. Locke, LaDeana W. Hillier, Wesley C. Warren, Kim C. Worley, Lynne V. Nazareth, Donna M. Muzny, Shiaw-Pyng Yang, Zhengyuan Wang, Asif T. Chinwalla, Pat Minx, Makedonka Mitreva, Lisa Cook, Kim D. Delehaunty, Catrina Fronick, Heather Schmidt, Lucinda A. Fulton, Robert S. Fulton, Joanne O. Nelson, Vincent Magrini, Craig Pohl, Tina A. Graves, Chris Markovic, Andy Cree, Huyen H. Dinh, Jennifer Hume, Christie L. Kovar, Gerald R. Fowler, Gerton Lunter, Stephen Meader, Andreas Heger, Chris P. Ponting, Tomas Marques-Bonet, Can Alkan, Lin Chen, Ze Cheng, Jeffrey M. Kidd, Evan E. Eichler, Simon White, Stephen Searle, Albert J. Vilella, Yuan Chen, Paul Flicek, Jian Ma, Brian Raney, Bernard Suh, Richard Burhans, Javier Herrero, David Haussler, Rui Faria, Olga Fernando, Fleur Darré, Domènec Farré, Elodie Gazave, Meritxell Oliva, Arcadi Navarro, Roberta Roberto, Oronzo Capozzi, Nicoletta Archidiacono, Giuliano Della Valle, Stefania Purgato, Mariano Rocchi, Miriam K. Konkel, Jerilyn A. Walker, Brygg Ullmer, Mark A. Batzer, Arian F. A. Smit, Robert Hubley, Claudio Casola, Daniel R. Schrider, Matthew W. Hahn, Victor Quesada, Xose S. Puente, Gonzalo R. Ordoñez, Carlos López-Otín, Tomas Vinar, Brona Brejova, Aakrosh Ratan, Robert S. Harris, Webb Miller, Carolin Kosiol, Heather A. Lawson, Vikas Taliwal, André L. Martins, Adam Siepel, Arindam RoyChoudhury, Xin Ma, Jeremiah Degenhardt, Carlos D. Bustamante, Ryan N. Gutenkunst, Thomas Mailund, Julien Y. Dutheil, Asger Hobolth, Mikkel H. Schierup, Oliver A. Ryder, Yuko Yoshinaga, Pieter J. de Jong, George M. Weinstock, Jeffrey Rogers, Elaine R. Mardis, Richard A. Gibbs, Richard K. Wilson
Publikováno v:
Nature. 608:E36-E36
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f6d20cdb9021fd31132dd0c7200dd7b7
https://doi.org/10.1038/s41586-022-04799-7
https://doi.org/10.1038/s41586-022-04799-7
Publikováno v:
Journal of Investigative Dermatology. 141:S26
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b73baece83a8f4deec502659426b7343
https://doi.org/10.1016/j.jid.2021.02.167
https://doi.org/10.1016/j.jid.2021.02.167
Autor:
Guangyi Fan, Todd P. Michael, R. Varma Penmetsa, Shiaw-Pyng Yang, Reetu Tuteja, Gengyun Zhang, Rajeev K. Varshney, Rachit K. Saxena, Wei Wu, Yupeng Li, Adam M. Whaley, Bicheng Yang, Mark T.A. Donoghue, W. Richard McCombie, Charles Spillane, Jaime Sheridan, Xun Xu, Sarwar Azam, Wenbin Chen, Huanming Yang, Hari D. Upadhyaya, Scott A. Jackson, Kulbhushan Saxena, Andrew Farmer, Jessica A. Schlueter, Arvind K. Bharti, Jun Wang, Trushar Shah, Gregory D. May, Douglas R. Cook, Aiko Iwata
Publikováno v:
Nature Biotechnology. 30:83-89
Pigeonpea is an important legume food crop grown primarily by smallholder farmers in many semi-arid tropical regions of the world. We used the Illumina next-generation sequencing platform to generate 237.2 Gb of sequence, which along with Sanger-base
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::226abdabf947e7e472aabbe5d2c9271e
https://doi.org/10.1038/nbt.2022
https://doi.org/10.1038/nbt.2022
Autor:
Shiaw-Pyng Yang, Judith A. Appleton, Yong Yin, Xu Zhang, Douglas P. Jasmer, Elaine R. Mardis, Sahar Abubucker, Dante S. Zarlenga, Zhengyuan Wang, Sandra W. Clifton, James P. McCarter, Kym Hallsworth-Pepin, John Martin, Wesley C. Warren, Richard K. Wilson, Patrick Minx, Robert S. Fulton, Makedonka Mitreva, Lucinda Fulton, Veena Bhonagiri, Christina M. Taylor
Publikováno v:
Nature genetics
Genome evolution studies for the phylum Nematoda have been limited by focusing on comparisons involving Caenorhabditis elegans. We report a draft genome sequence of Trichinella spiralis, a food-borne zoonotic parasite, which is the most common cause
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5fe84db1fcd0dfba4b8dae1c39bceb55
https://doi.org/10.1038/ng.769
https://doi.org/10.1038/ng.769
Detecting heterozygosity in shotgun genome assemblies: Lessons from obligately outcrossing nematodes
Autor:
Cristel G. Thomas, Eric S. Haag, Shiaw-Pyng Yang, Elizabeth Pekarek, Antoine Barrière, Ilya Ruvinsky
Publikováno v:
Genome Research. 19:470-480
The majority of nematodes are gonochoristic (dioecious) with distinct male and female sexes, but the best-studied species, Caenorhabditis elegans, is a self-fertile hermaphrodite. The sequencing of the genomes of C. elegans and a second hermaphrodite
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d214cccf78e9a2f3d00721eefb1b718
https://doi.org/10.1101/gr.081851.108
https://doi.org/10.1101/gr.081851.108
Autor:
Carolin Kosiol, Belinda Giardine, Janet A. Hopkins, Andrew G. Clark, Ryan D. Hernandez, Peng Wang, Peter D. Stenson, Yu-Hui Rogers, Aaron L. Halpern, Andrew D. Kern, Webb Miller, Kymberlie H. Pepin, Melissa J. Hubisz, Kimberly D. Delehaunty, Robert E. Palermo, Matthew W. Hahn, Erica Sodergren, Brian P. Walenz, Scott M. Smith, Sandra L. Lee, Xiang Qin, Yucheng Feng, Ewen F. Kirkness, Vandita Joshi, Xiaoqiu Huang, Amanda F. Svatek, Fan Yang, Young Ho Kim, Laura Clarke, John E. Karro, Courtney Sherell White, Jessica Kolb, David Glenn Smith, Clay Davis, Jian Ma, Shobha Patil, Todd Wylie, Arian F.A. Smit, Shalini N. Jhangiani, Michael G. Katze, Edward V. Ball, Jennifer Godfrey, Heather A. Lawson, Brian J. Raney, Michael Holder, Ross C. Hardison, Christian J. Buhay, Zhangwan Li, Alicia Hawes, Eric J. Vallender, David A. Wheeler, James C. Wallace, Galt P. Barber, Jinchuan Xing, Yufeng Shen, Kayla E. Smith, Marvin Diep Dao, Jeffrey Rogers, Evan E. Eichler, Cynthia Pfannkoch, Jireh Santibanez, Kateryna D. Makova, Kashif Hirani, Robert M. Kuhn, Yanru Ren, David Neil Cooper, David Haussler, Carlos Bustamante, Adam Siepel, Mimi N. Chandrabose, Xiaoming Liu, George M. Weinstock, Teresa Utterback, Jarret Glasscock, Tomas Vinar, R. Alan Harris, Anis Karimpour-Fard, San Juana Ruiz, Lucinda Fulton, Asif T. Chinwalla, Aniko Sabo, Xinwei She, Charles Addo-Quaye, David L. Nelson, Lora Lewis, Hui Ke, Eli Venter, Donna M. Muzny, Alison Marklein, Bruce T. Lahn, Grace Pai, Brian W. Schneider, Shannon Dugan-Rocha, Henry Xing-Zhi Song, Jeremiah D. Degenhardt, Kyudong Han, Huaiyang Jiang, Stephanie M. Moore, Ian Schenck, Dinh Ngoc Ngo, Michael J. Cox, Heidie A. Paul, Ann S. Zwieg, Kim C. Worley, Craig Pohl, Rui Chen, Robert L. Strausberg, Ling-Ling Pu, Donna Karolchik, Jonathan R. Pollack, Geoffrey Okwuonu, Jennifer Hume, Elaine R. Mardis, David N. Messina, W. James Kent, William E. O'Brien, Fan Hsu, Andrew R. Jackson, Huyen Dinh, Hui Wang, LaDeana W. Hillier, Richard A. Gibbs, Alexandra Denby, Wesley C. Warren, Brygg Ullmer, Laura J. Dumas, Yih-shin Liu, Tony Attaway, Richard K. Wilson, Patrick Minx, James M. Sikela, Lan Zhang, Sandra Hines, Steven J. M. Jones, Amit Indap, Ze Cheng, Karin A. Remington, Stephanie Bell, Jungnam Lee, Kelly E. Bernard, Sang-Gook Han, Mariano Rocchi, Judith Hernandez, Betsy Ferguson, Hildegard Kehrer-Sawatzki, Ziad Khan, Aleksandar Milosavljevic, Joanne O. Nelson, Jeffery P. Demuth, Richard Burhans, David A. Parker, Lynne V. Nazareth, Roger E. Bumgarner, Marco A. Marra, Robert Baertsch, Andrew Cree, Paul Havlak, J. Craig Venter, Kay Prüfer, Rasmus Nielsen, Ewan Birney, Miriam K. Konkel, Mark A. Batzer, Arthur M. Lesk, Jacqueline E. Schein, Granger G. Sutton, Yan Ding, Yue Liu, Andy Peng Xiang, Miklós Csürös, Selina Vattathil, John W. Wallis, R. Gerald Fowler, Shiaw-Pyng Yang, Ramatu Ayiesha Gabisi, Toni T. Garner
Publikováno v:
Science. 316:222-234
The rhesus macaque ( Macaca mulatta ) is an abundant primate species that diverged from the ancestors of Homo sapiens about 25 million years ago. Because they are genetically and physiologically similar to humans, rhesus monkeys are the most widely u
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::529333918462caf3b6ccd4f9829c4752
https://doi.org/10.1126/science.1139247
https://doi.org/10.1126/science.1139247
Autor:
Asif T. Chinwalla, LaDeana W. Hillier, Dmitry Varabei, Jacqueline E. Schein, René L. Warren, Asim Siddiqui, Xiaoqiu Huang, Marco A. Marra, Martin Krzywinski, James W. Kronstad, Steven J.M. Jones, Wesley C. Warren, David N. Messina, Richard K. Wilson, Shiaw-Pyng Yang, John W. Wallis, Darren Platt
Publikováno v:
Genome Research. 16:768-775
We describe a targeted approach to improve the contiguity of whole-genome shotgun sequence (WGS) assemblies at run-time, using information from Bacterial Artificial Chromosome (BAC)-based physical maps. Clone sizes and overlaps derived from clone fin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::06a37a3e5547ea9bbe79706df13b4393
https://doi.org/10.1101/gr.5090606
https://doi.org/10.1101/gr.5090606
Autor:
Asif T. Chinwalla, Richard K. Wilson, Patrick Minx, Elaine R. Mardis, Xiaoqiu Huang, Shiaw Pyng Yang, LaDeana W. Hillier
Publikováno v:
Nucleic Acids Research
We introduce a data structure called a superword array for finding quickly matches between DNA sequences. The superword array possesses some desirable features of the lookup table and suffix array. We describe simple algorithms for constructing and u
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b1a64f6dbc6431e52a4ccab01f448e22
https://doi.org/10.1093/nar/gkj419
https://doi.org/10.1093/nar/gkj419
Autor:
Michael C. Wendl, Shiaw-Pyng Yang
Publikováno v:
Bioinformatics. 20:1527-1534
Motivation: Investigators utilize gap estimates for DNA sequencing projects. Standard theories assume sequences are independently and identically distributed, leading to appreciable under-prediction of gaps. Results: Using a statistical scaling facto
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ddc227756eb8173f1d620a84a8ef5ceb
https://doi.org/10.1093/bioinformatics/bth120
https://doi.org/10.1093/bioinformatics/bth120