Hepatitis C virus RNA is 5'-capped with flavin adenine dinucleotide.

Autor: Sherwood AV; Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Rivera-Rangel LR; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Ryberg LA; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Larsen HS; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Anker KM; Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Costa R; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Vågbø CB; Proteomics and Modomics Experimental Core (PROMEC), Norwegian University of Science and Technology and the Central Norway Regional Health Authority, Trondheim, Norway., Jakljevič E; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Pham LV; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Fernandez-Antunez C; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Indrisiunaite G; Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Podolska-Charlery A; Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Grothen JER; Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Langvad NW; Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Fossat N; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Offersgaard A; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Al-Chaer A; Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Nielsen L; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Kuśnierczyk A; Proteomics and Modomics Experimental Core (PROMEC), Norwegian University of Science and Technology and the Central Norway Regional Health Authority, Trondheim, Norway., Sølund C; Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Department of Clinical Medicine, University of Copenhagen, Copenhagen N, Denmark., Weis N; Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Department of Clinical Medicine, University of Copenhagen, Copenhagen N, Denmark., Gottwein JM; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Holmbeck K; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Bottaro S; Section for Biomolecular Sciences, Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Ramirez S; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark., Bukh J; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark. jbukh@sund.ku.dk.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark. jbukh@sund.ku.dk., Scheel TKH; Copenhagen Hepatitis C Program (CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, Denmark. tscheel@sund.ku.dk.; Copenhagen Hepatitis C Program (CO-HEP), Department of Immunology and Microbiology, University of Copenhagen, Copenhagen N, Denmark. tscheel@sund.ku.dk.; Laboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY, USA. tscheel@sund.ku.dk., Vinther J; Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen N, Denmark. jvinther@bio.ku.dk.

Publikováno v: Nature [Nature] 2023 Jul; Vol. 619 (7971), pp. 811-818. Date of Electronic Publication: 2023 Jul 05.

Chromosome evolution and the genetic basis of agronomically important traits in greater yam.

Autor: Bredeson JV; Department of Molecular & Cell Biology, University of California, Berkeley, CA, 94720, USA., Lyons JB; Department of Molecular & Cell Biology, University of California, Berkeley, CA, 94720, USA.; Innovative Genomics Institute, Berkeley, CA, USA., Oniyinde IO; International Institute of Tropical Agriculture, PMB 5320, Oyo Road, Ibadan, Nigeria., Okereke NR; National Root Crops Research Institute (NRCRI), Umudike, Nigeria., Kolade O; International Institute of Tropical Agriculture, PMB 5320, Oyo Road, Ibadan, Nigeria., Nnabue I; National Root Crops Research Institute (NRCRI), Umudike, Nigeria., Nwadili CO; National Root Crops Research Institute (NRCRI), Umudike, Nigeria., Hřibová E; Institute of Experimental Botany of the Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900, Olomouc, Czech Republic., Parker M; School of Life Sciences, University of Dundee, Dundee, UK., Nwogha J; National Root Crops Research Institute (NRCRI), Umudike, Nigeria., Shu S; DOE Joint Genome Institute, Berkeley, CA, USA., Carlson J; DOE Joint Genome Institute, Berkeley, CA, USA., Kariba R; World Agroforestry (CIFOR-ICRAF), Nairobi, Kenya.; African Orphan Crops Consortium, Nairobi, Kenya., Muthemba S; World Agroforestry (CIFOR-ICRAF), Nairobi, Kenya.; African Orphan Crops Consortium, Nairobi, Kenya., Knop K; School of Life Sciences, University of Dundee, Dundee, UK., Barton GJ; School of Life Sciences, University of Dundee, Dundee, UK., Sherwood AV; School of Life Sciences, University of Dundee, Dundee, UK.; Department of Biology, University of Copenhagen, Copenhagen, Denmark., Lopez-Montes A; International Institute of Tropical Agriculture, PMB 5320, Oyo Road, Ibadan, Nigeria.; International Trade Center, Accra, Ghana., Asiedu R; International Institute of Tropical Agriculture, PMB 5320, Oyo Road, Ibadan, Nigeria., Jamnadass R; World Agroforestry (CIFOR-ICRAF), Nairobi, Kenya.; African Orphan Crops Consortium, Nairobi, Kenya., Muchugi A; World Agroforestry (CIFOR-ICRAF), Nairobi, Kenya.; African Orphan Crops Consortium, Nairobi, Kenya., Goodstein D; DOE Joint Genome Institute, Berkeley, CA, USA., Egesi CN; International Institute of Tropical Agriculture, PMB 5320, Oyo Road, Ibadan, Nigeria.; National Root Crops Research Institute (NRCRI), Umudike, Nigeria.; Cornell University, Ithaca, NY, 14850, USA., Featherston J; Agricultural Research Council, Biotechnology Platform, Pretoria, South Africa., Asfaw A; International Institute of Tropical Agriculture, PMB 5320, Oyo Road, Ibadan, Nigeria., Simpson GG; School of Life Sciences, University of Dundee, Dundee, UK.; James Hutton Institute, Dundee, UK., Doležel J; Institute of Experimental Botany of the Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900, Olomouc, Czech Republic., Hendre PS; World Agroforestry (CIFOR-ICRAF), Nairobi, Kenya.; African Orphan Crops Consortium, Nairobi, Kenya., Van Deynze A; University of California, Davis, Davis, CA, 95616, USA., Kumar PL; International Institute of Tropical Agriculture, PMB 5320, Oyo Road, Ibadan, Nigeria., Obidiegwu JE; National Root Crops Research Institute (NRCRI), Umudike, Nigeria. ejikeobi@yahoo.com., Bhattacharjee R; International Institute of Tropical Agriculture, PMB 5320, Oyo Road, Ibadan, Nigeria. r.bhattacharjee@cgiar.org., Rokhsar DS; Department of Molecular & Cell Biology, University of California, Berkeley, CA, 94720, USA. dsrokhsar@gmail.com.; Innovative Genomics Institute, Berkeley, CA, USA. dsrokhsar@gmail.com.; DOE Joint Genome Institute, Berkeley, CA, USA. dsrokhsar@gmail.com.; Okinawa Institute of Science and Technology, Onna, Okinawa, Japan. dsrokhsar@gmail.com.; Chan-Zuckerberg BioHub, 499 Illinois St., San Francisco, CA, 94158, USA. dsrokhsar@gmail.com.

Publikováno v: Nature communications [Nat Commun] 2022 Apr 14; Vol. 13 (1), pp. 2001. Date of Electronic Publication: 2022 Apr 14.

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m ⁶ A modification.

Autor: Parker MT; School of Life Sciences, University of Dundee, Dundee, United Kingdom., Knop K; School of Life Sciences, University of Dundee, Dundee, United Kingdom., Sherwood AV; School of Life Sciences, University of Dundee, Dundee, United Kingdom., Schurch NJ; School of Life Sciences, University of Dundee, Dundee, United Kingdom., Mackinnon K; School of Life Sciences, University of Dundee, Dundee, United Kingdom., Gould PD; Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom., Hall AJ; Earlham Institute, Norwich Research Park, Norwich, United Kingdom., Barton GJ; School of Life Sciences, University of Dundee, Dundee, United Kingdom., Simpson GG; School of Life Sciences, University of Dundee, Dundee, United Kingdom.; James Hutton Institute, Invergowrie, United Kingdom.

Publikováno v: ELife [Elife] 2020 Jan 14; Vol. 9. Date of Electronic Publication: 2020 Jan 14.

Riboswitch-Mediated Gene Regulation: Novel RNA Architectures Dictate Gene Expression Responses.

Autor: Sherwood AV; Department of Microbiology and Center for RNA Biology, The Ohio State University, Columbus, Ohio 43210; email: henkin.3@osu.edu.; Molecular, Cellular and Developmental Graduate Program, The Ohio State University, Columbus, Ohio 43210., Henkin TM; Department of Microbiology and Center for RNA Biology, The Ohio State University, Columbus, Ohio 43210; email: henkin.3@osu.edu.

Publikováno v: Annual review of microbiology [Annu Rev Microbiol] 2016 Sep 08; Vol. 70, pp. 361-74.