Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning

Autor: Emily E. Delorean, Ramey C. Youngblood, Sheron A. Simpson, Ashley N. Schoonmaker, Brian E. Scheffler, William B. Rutter, Amanda M. Hulse-Kemp

Publikováno v: Frontiers in Plant Science, Vol 14 (2023)

As sequencing costs decrease and availability of high fidelity long-read sequencing increases, generating experiment specific de novo genome assemblies becomes feasible. In many crop species, obtaining the genome of a hybrid or heterozygous individua

Externí odkaz: https://doaj.org/article/57f4b1036a084e05a92a545384b0c4b0

Initiation of genomics-assisted breeding in Virginia-type peanuts through the generation of a de novo reference genome and informative markers

Autor: Cassondra S. Newman, Ryan J. Andres, Ramey C. Youngblood, Jacqueline D. Campbell, Sheron A. Simpson, Steven B. Cannon, Brian E. Scheffler, Andrew T. Oakley, Amanda M. Hulse-Kemp, Jeffrey C. Dunne

Publikováno v: Frontiers in Plant Science, Vol 13 (2023)

IntroductionVirginia-type peanut, Arachis hypogaea subsp. hypogaea, is the second largest market class of peanut cultivated in the United States. It is mainly used for large-seeded, in-shell products. Historically, Virginia-type peanut cultivars were

Externí odkaz: https://doaj.org/article/d8d59303443845afa0b4b32d96211c38

Development of a Large Set of Microsatellite Markers in Zapote Mamey (Pouteria sapota (Jacq.) H.E. Moore & Stearn) and Their Potential Use in the Study of the Species

Autor: Renée S. Arias, Jaime Martínez-Castillo, Victor S. Sobolev, Nasib H. Blancarte-Jasso, Sheron A. Simpson, Linda L. Ballard, Mary V. Duke, Xiaofen F. Liu, Brian M. Irish, Brian E. Scheffler

Publikováno v: Molecules, Vol 20, Iss 6, Pp 11400-11417 (2015)

Pouteria sapota is known for its edible fruits that contain unique carotenoids, as well as for its fungitoxic, anti-inflammatory and anti-oxidant activity. However, its genetics is mostly unknown, including aspects about its genetic diversity and dom

Externí odkaz: https://doaj.org/article/04482a9399694026be08259567b6b44a

Gene disruption by structural mutations drives selection in US rice breeding over the last century

Autor: Anna M. McClung, Ramsey C Youngblood, Daniel G. Peterson, Walid Korani, Justin N. Vaughn, Sheron A. Simpson, Jane Grimwood, Doreen Ware, Jeremy D. Edwards, Joshua C. Stein, Brian E. Scheffler

The genetic basis of general plant vigor is of major interest to food producers, yet the trait is recalcitrant to genetic mapping because of the number of loci involved, their small effects, and linkage. Observations of heterosis in many crops sugges

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::3c8a166f4e4255de0726daaaee95cf08
https://doi.org/10.1101/2020.08.26.268342

New tools to screen wild peanut species for aflatoxin accumulation and genetic fingerprinting

Autor: Naveen Puppala, Francisco Javier De Blas, Victor S. Sobolev, Brian E. Scheffler, Valerie A. Orner, Guillermo J. Seijo, Sheron A. Simpson, Renee S. Arias, Travis Walk, Alicia N. Massa, Linda L. Ballard

Publikováno v: BMC Plant Biology
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
BMC Plant Biology, Vol 18, Iss 1, Pp 1-13 (2018)

Aflatoxin contamination in peanut seeds is still a serious problem for the industry and human health. No stable aflatoxin resistant cultivars have yet been produced, and given the narrow genetic background of cultivated peanuts, wild species became a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cd988067baf9cfafe5855a90717d4eb9
http://europepmc.org/articles/PMC6094572