Zobrazeno 1 - 10 of 86 pro vyhledávání: '"Sherman, David James"'
2
Characterising competition and cooperation potentials in microbial communities using discrete models of metabolism. An exploratory analysis
Autor: Lecomte, Maxime, Sherman, David James, Falentin, Hélène, Frioux, Clémence
Publikováno v: JOBIM 2022-JOURNÉES OUVERTES EN BIOLOGIE, INFORMATIQUE ET MATHÉMATIQUES
JOBIM 2022-JOURNÉES OUVERTES EN BIOLOGIE, INFORMATIQUE ET MATHÉMATIQUES, Jul 2022, Rennes, France
International audience
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______165::e23ee50237e970634319b206b2778f0a
https://hal.inrae.fr/hal-03839337/file/JOBIM_ML_2022.pdf
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3
Accelerating metabolic models evaluation with statistical metamodels: application to Salmonella infection models
Autor: Frioux, Clémence, Huet, Sylvie, Labarthe, Simon, Martinelli, Julien, Malou, Thibault, Sherman, David James, Taupin, Marie-Luce, Ugalde-Salas, Pablo
Mathematical and numerical models are increasingly used in microbial ecology to model the fate of microbial communities in their ecosystem. These models allow to connect in a mechanistic framework species-level informations, such as the microbial gen
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::475e33343ae11f03fac693e8ed285f87
https://hal.inrae.fr/hal-03635862v2/file/main_final_version.pdf
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4
The functional microbiome of grapevine throughout plant evolutionary history and lifetime
Autor: Fournier, Paola, Pellan, Lucile, Barroso-Bergadà, Didac, Bohan, David, Candresse, Thierry, Delmotte, François, Dufour, Marie-Cécile, Lauvergeat, Virginie, Le Marrec, Claire, Marais, Armelle, Martins, Guilherme, Masneuf-Pomarède, Isabelle, Rey, Patrice, Sherman, David James, This, Patrice, Frioux, Clémence, Labarthe, Simon, Vacher, Corinne
Publikováno v: Advances in Ecological Research
Advances in Ecological Research, 2022, Advances in Ecological Research, 67, pp.27-99. ⟨10.1016/bs.aecr.2022.09.001⟩
International audience; European grapevine is a complex holobiont composed of two plant genomes, that of the scion (Vitis vinifera L.) and the rootstock (Vitis spp.), and a multitude of microbial genomes that collectively form the microbiome. The gra
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______165::6921aeec3107e49e595b2dff12dc7d65
https://hal.inrae.fr/hal-03858395/file/Fournier_et_al_2022.pdf
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5
Modelling metabolic network dynamics in a cheese bacterial community
Autor: Lecomte, Maxime, Sherman, David James, Falentin, Hélène, Frioux, Clémence, Labarthe, Simon
Publikováno v: CMSB, The 19th conference on Computational Methods in Systems Biology
CMSB, The 19th conference on Computational Methods in Systems Biology, Sep 2021, Bordeaux, France
CMSB, 19th International Conference on Computational Methods in Systems Biology
CMSB, 19th International Conference on Computational Methods in Systems Biology, Jul 2021, Bordeaux, France
JOBIM,Journées Ouvertes en Biologie, Informatique et Mathématiques
JOBIM,Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France
MPA, Metabolic Pathway Analysis
MPA, Metabolic Pathway Analysis, Aug 2021, Knoxville, United States
International audience
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::f53f4aa44f3eb5f642e4d83d249636a1
https://hal.inria.fr/hal-03533795
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6
Dériver des associations de gène pour des modèles métaboliques
Autor: Issa, Razanne, Sherman, David James
Publikováno v: [Research Report] RR-9246, Inria Bordeaux Sud-Ouest. 2018
We define a formal procedure for inferring gene-protein-reaction (GPR) relations from complete metabolic models, using a logical representation of knowledge and a small set of inference rules. We show that different use cases of metabolic models requ
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::31f10ead15e17b4fba340d12ff710c09
http://hdl.handle.net/20.500.12278/108765
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7
Many interspecific chromosomal introgressions are highly prevalent in Holarctic Saccharomyces uvarum strains found in human-related fermentations
Autor: Albertin, Warren, Chernova, Maria, Durrens, Pascal, Guichoux, Erwan, Sherman, David James, Masneuf-Pomarede, Isabelle, Marullo, Philippe
Publikováno v: Yeast
Yeast, Wiley, 2018, 35 (1), pp.141-156. ⟨10.1002/yea.3248⟩
Yeast, 2018, 35 (1), pp.141-156. ⟨10.1002/yea.3248⟩
In the last two decades, the extensive genome sequencing of strains belonging to the Saccharomyces genus has revealed the complex reticulated evolution of this group. Among the various evolutionary mechanisms described, the introgression of large chr
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::cb51e8abef6fe4c49418b30324aa6e46
http://hdl.handle.net/20.500.12278/108847
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8
Phylogenomic Analysis of Oenococcus oeni Reveals Specific Domestication of Strains to Cider and Wines
Autor: Campbell-Sills, Hugo, El Khoury, Mariette, Favier, Marion, Romano, Andrea, Biasioli, Franco, Spano, Giuseppe, Sherman, David James, Bouchez, Olivier, Coton, Emmanuel, Coton, Monika, Okada, Sanae, Tanaka, Naoto, Dols-Lafargue, Marguerite, Lucas, Patrick M
Publikováno v: Genome Biology and Evolution
Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2015, 7 (6), pp.1506-18. ⟨10.1093/gbe/evv084⟩
Genome Biology and Evolution, 2015, 7 (6), pp.1506-18. ⟨10.1093/gbe/evv084⟩
Genome Biology and Evolution 6 (7), 1506-1518. (2015)
International audience; Oenococcus oeni is a lactic acid bacteria species encountered particularly in wine, where it achieves the malolactic fermentation. Molecular typing methods have previously revealed that the species is made of several genetic g
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::05bbae50495b196b8a897105b8b0466a
https://hal.inria.fr/hal-01202801
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9
Reconstruction and validation of the genome-scale metabolic model of Yarrowia lipolytica iNL750
Autor: Sherman, David James, Loira, Nicolás
Publikováno v: Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM'10)
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM'10), Sep 2010, Montpellier, France. 2010
JOBIM 2010 Poster; National audience; For many fungal genomes of biotechnological interest, the combination of large-scale sequencing projects and in-depth experimental studies has made it feasible to undertake metabolic network reconstruction. An ex
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::d7a388b2434a4fb813f68eabf65bef32
https://hal.inria.fr/hal-00652929
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