Zobrazeno 1 - 10
of 26
pro vyhledávání: '"Shel Swenson"'
Autor:
Daniel S Katz, Sou-Cheng T Choi, Hilmar Lapp, Ketan Maheshwari, Frank Löffler, Matthew Turk, Marcus D Hanwell, Nancy Wilkins-Diehr, James Hetherington, James Howison, Shel Swenson, Gabrielle D Allen, Anne C Elster, Bruce Berriman, Colin Venters
Publikováno v:
Journal of Open Research Software, Vol 2, Iss 1, Pp e6-e6 (2014)
Challenges related to development, deployment, and maintenance of reusable software for science are becoming a growing concern. Many scientists’ research increasingly depends on the quality and availability of software upon which their works are bu
Externí odkaz:
https://doaj.org/article/1952244386564b1393f0e2c676b085d7
Autor:
Shel Swenson, M.1, Anderson, Joshua1,2, Ash, Andrew1,2, Gaurav, Prashant2, Sükösd, Zsuzsanna1,3,4, Bader, David A.2, Harvey, Stephen C.5, Heitsch, Christine E.1 heitsch@math.gatech.edu
Publikováno v:
BMC Research Notes. 2012, Vol. 5 Issue 1, p1-6. 6p. 3 Graphs.
Publikováno v:
Sükösd, Z, Swenson, M S, Kjems, J & Heitsch, C E 2013, ' Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions ', Nucleic Acids Research, vol. 41, no. 5, pp. 2807-2816 . https://doi.org/10.1093/nar/gks1283
Nucleic Acids Research
Nucleic Acids Research
Recent advances in RNA structure determination include using data from high-throughput probing experiments to improve thermodynamic prediction accuracy. We evaluate the extent and nature of improvements in data-directed predictions for a diverse set
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ac8d65a78e47a6910aa95a61ca172fef
https://pure.au.dk/portal/da/publications/evaluating-the-accuracy-of-shapedirected-rna-secondary-structure-predictions(15458842-63fb-4871-8646-e2ca54bf17f6).html
https://pure.au.dk/portal/da/publications/evaluating-the-accuracy-of-shapedirected-rna-secondary-structure-predictions(15458842-63fb-4871-8646-e2ca54bf17f6).html
Autor:
Stephen C. Harvey, Zsuzsanna Sükösd, M. Shel Swenson, Prashant Gaurav, David A. Bader, Joshua Anderson, Christine E. Heitsch, Andrew Ash
Publikováno v:
BMC Research Notes
Swenson, M S, Anderson, J, Ash, A, Gaurav, P, Sükösd, Z, Bader, D A, Harvey, S C & Heitsch, C E 2012, ' GTfold: Enabling parallel RNA secondary structure prediction on multi-core desktops ', BMC Research Notes, vol. 5, no. 341 . https://doi.org/10.1186/1756-0500-5-341
Swenson, M S, Anderson, J, Ash, A, Gaurav, P, Sükösd, Z, Bader, D A, Harvey, S C & Heitsch, C E 2012, ' GTfold: Enabling parallel RNA secondary structure prediction on multi-core desktops ', BMC Research Notes, vol. 5, no. 341 . https://doi.org/10.1186/1756-0500-5-341
Accurate and efficient RNA secondary structure prediction remains an important open problem in computational molecular biology. Historically, advances in computing technology have enabled faster and more accurate RNA secondary structure predictions.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d4a4c6812e4bceb515cd5821be5023cf
https://pubmed.ncbi.nlm.nih.gov/22747589
https://pubmed.ncbi.nlm.nih.gov/22747589
Publikováno v:
Systematic biology. 61(2)
Many research groups are estimating trees containing anywhere from a few thousands to hundreds of thousands of species, toward the eventual goal of the estimation of a Tree of Life, containing perhaps as many as several million leaves. These phylogen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::40bb3fe4fe9dce6baefa14ec3a6921bc
https://pubmed.ncbi.nlm.nih.gov/21934137
https://pubmed.ncbi.nlm.nih.gov/21934137
Publikováno v:
Algorithms for Molecular Biology, Vol 5, Iss 1, p 8 (2010)
Algorithms for Molecular Biology : AMB
Algorithms for Molecular Biology : AMB
Background Supertree methods comprise one approach to reconstructing large molecular phylogenies given multi-marker datasets: trees are estimated on each marker and then combined into a tree (the "supertree") on the entire set of taxa. Supertrees can
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8dff0422c0709a7f561c0c635e98574b
http://www.almob.org/content/5/1/8
http://www.almob.org/content/5/1/8
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783642152931
WABI
WABI
Although many supertree methods have been developed in the last few decades, none has been shown to produce more accurate trees than the popular Matrix Representation with Parsimony (MRP) method. In this paper, we evaluate the performance of several
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0c9061a29be815451688c1b2954655e5
https://doi.org/10.1007/978-3-642-15294-8_24
https://doi.org/10.1007/978-3-642-15294-8_24
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783642042409
WABI
WABI
Supertree methods comprise one approach to reconstructing large molecular phylogenies given estimated source trees for overlapping subsets of the entire set of taxa. These source trees are combined into a single supertree on the full set of taxa usin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b2eec4e1991d6a2a0c9f133b3ea34a14
https://doi.org/10.1007/978-3-642-04241-6_28
https://doi.org/10.1007/978-3-642-04241-6_28
Publikováno v:
Mathematical biosciences. 208(2)
Closure operations are a useful device in both the theory and practice of tree reconstruction in biology and other areas of classification. These operations take a collection of trees (rooted or unrooted) that classify overlapping sets of objects at
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::91743fc4ddcc06027d6a681fa8f482cd
https://pubmed.ncbi.nlm.nih.gov/17303190
https://pubmed.ncbi.nlm.nih.gov/17303190
Autor:
Colin C. Venters, James Howison, Gabrielle Allen, Anne C. Elster, Shel Swenson, Matthew J. Turk, Daniel S. Katz, Ketan Maheshwari, Sou-Cheng T. Choi, Bruce Berriman, James Hetherington, Marcus D. Hanwell, Hilmar Lapp, Nancy Wilkins-Diehr, Frank Löffler
Publikováno v:
Journal of Open Research Software; Vol 2, No 1 (2014); e6
Journal of Open Research Software, Vol 2, Iss 1, Pp e6-e6 (2014)
NASA Astrophysics Data System
Journal of Open Research Software, Vol 2, Iss 1, Pp e6-e6 (2014)
NASA Astrophysics Data System
Challenges related to development, deployment, and maintenance of reusable software for science are becoming a growing concern. Many scientists' research increasingly depends on the quality and availability of software upon which their works are buil
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5a95a2e26ca7052ae542610d96beb3e9
https://doi.org/10.5334/jors.an
https://doi.org/10.5334/jors.an