Zobrazeno 1 - 10
of 109
pro vyhledávání: '"Shang, Jiayu"'
Bacteriophages are viruses that target bacteria, playing a crucial role in microbial ecology. Phage proteins are important in understanding phage biology, such as virus infection, replication, and evolution. Although a large number of new phages have
Externí odkaz:
http://arxiv.org/abs/2408.06402
Motivation: Protein embedding, which represents proteins as numerical vectors, is a crucial step in various learning-based protein annotation/classification problems, including gene ontology prediction, protein-protein interaction prediction, and pro
Externí odkaz:
http://arxiv.org/abs/2405.11735
Publikováno v:
published on Bioinformatics Advances 2023
Motivation: There is accumulating evidence showing the important roles of bacteriophages (phages) in regulating the structure and functions of the microbiome. However, lacking an easy-to-use and integrated phage analysis software hampers microbiome-r
Externí odkaz:
http://arxiv.org/abs/2303.15707
Motivation: As viruses that mainly infect bacteria, phages are key players across a wide range of ecosystems. Analyzing phage proteins is indispensable for understanding phages' functions and roles in microbiomes. High-throughput sequencing enables u
Externí odkaz:
http://arxiv.org/abs/2301.12422
Extractive models usually formulate text summarization as extracting fixed top-$k$ salient sentences from the document as a summary. Few works exploited extracting finer-grained Elementary Discourse Unit (EDU) with little analysis and justification f
Externí odkaz:
http://arxiv.org/abs/2210.04029
Bacteriophages, which are viruses infecting bacteria, are the most ubiquitous and diverse entities in the biosphere. There is accumulating evidence revealing their important roles in shaping the structure of various microbiomes. Thanks to (viral) met
Externí odkaz:
http://arxiv.org/abs/2209.01942
Publikováno v:
Shipin Kexue, Vol 45, Iss 6, Pp 192-198 (2024)
In order to investigate the effects of different thawing methods on the eating quality of frozen salted crab and further to select the best thawing method, this study compared and analyzed the thawing curves using five thawing methods including low t
Externí odkaz:
https://doaj.org/article/e4da497e8620496e9daf7634ff90307b
Publikováno v:
Briefings in Bioinformatics, November 2022
Bacteriophages (or phages), which infect bacteria, have two distinct lifestyles: virulent and temperate. Predicting the lifestyle of phages helps decipher their interactions with their bacterial hosts, aiding phages' applications in fields such as ph
Externí odkaz:
http://arxiv.org/abs/2206.09693
Publikováno v:
Shipin Kexue, Vol 45, Iss 4, Pp 315-322 (2024)
In order to explore the changes in flavor nucleotide-related compounds in low-salt pickled potherb mustard during storage and transportation, a high-performance liquid chromatography (HPLC) method was established to analyze the changes in the content
Externí odkaz:
https://doaj.org/article/28d92f79b0f44bce99da28d6689a0ffe
Publikováno v:
Briefings in Bioinformatics, Volume 23, Issue 4, July 2022, bbac258
Motivation: Bacteriophages are viruses infecting bacteria. Being key players in microbial communities, they can regulate the composition/function of microbiome by infecting their bacterial hosts and mediating gene transfer. Recently, metagenomic sequ
Externí odkaz:
http://arxiv.org/abs/2201.04778