Genomic analysis of global Mycobacterium abscessus isolates reveals ongoing evolution of drug-resistance-associated genes.

Autor: Yang T; Clinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, 310003, China., Beach KE; Department of Pathology, University of Utah, Salt Lake City, Utah, 84112, USA., Zhu C; Beijing Chest Hospital, Capital Medical University, Beijing, 101149, China., Gan M; Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA., Wang W; Clinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, 310003, China., Zhou H; Clinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, 310003, China., Peng L; Clinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, 310003, China., Wang S; Clinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, 310003, China., Cai L; Clinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, 310003, China., Li W; Beijing Chest Hospital, Capital Medical University, Beijing, 101149, China., Davis JB; ARUP Laboratories, Salt Lake City, Utah, 84108, USA., Cicchetti N; Department of Pathology, University of Utah, Salt Lake City, Utah, 84112, USA., Slechta ES; Biofire Diagnostics, Salt Lake City, Utah, 84108, USA., Barker A; Department of Pathology, University of Utah, Salt Lake City, Utah, 84112, USA.; ARUP Laboratories, Salt Lake City, Utah, 84108, USA., Shakir SM; Department of Pathology, University of Utah, Salt Lake City, Utah, 84112, USA.; ARUP Laboratories, Salt Lake City, Utah, 84108, USA., Carey AF; Department of Pathology, University of Utah, Salt Lake City, Utah, 84112, USA.; ARUP Laboratories, Salt Lake City, Utah, 84108, USA., Liu Q; Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA.; Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA.

Publikováno v: The Journal of infectious diseases [J Infect Dis] 2024 Nov 26. Date of Electronic Publication: 2024 Nov 26.

Updates to the Diagnosis and Clinical Management of Helicobacter pylori Infections.

Autor: Shakir SM; Department of Pathology, University of Utah, Salt Lake City, UT, United States.; ARUP Laboratories, Salt Lake City, UT, United States., Shakir FA; Intermountain Health Care, Salt Lake City, UT, United States., Couturier MR; Department of Pathology, University of Utah, Salt Lake City, UT, United States.; ARUP Laboratories, Salt Lake City, UT, United States.

Publikováno v: Clinical chemistry [Clin Chem] 2023 Aug 02; Vol. 69 (8), pp. 869-880.

Multicenter Evaluation of a Gradient Diffusion Method for Antimicrobial Susceptibility Testing of Helicobacter pylori.

Autor: Shakir SM; Department of Pathology, University of Utah School of Medicine, Salt Lake City, Utah, USA.; ARUP Institute for Clinical and Experimental Pathology, Salt Lake City, Utah, USA., Otiso J; Department of Laboratory Medicine, Cleveland Clinicgrid.239578.2, Cleveland, Ohio, USA., Keller G; Department of Laboratory Medicine, Cleveland Clinicgrid.239578.2, Cleveland, Ohio, USA., Heule HV; Department of Laboratory Medicine, Cleveland Clinicgrid.239578.2, Cleveland, Ohio, USA., Osborn LJ; Department of Laboratory Medicine, Cleveland Clinicgrid.239578.2, Cleveland, Ohio, USA., Cole N; Department of Laboratory Medicine and Pathology, Mayo Clinicgrid.66875.3a, Rochester, Minnesota, USA., Schuetz AN; Department of Laboratory Medicine and Pathology, Mayo Clinicgrid.66875.3a, Rochester, Minnesota, USA., Richter SS; Department of Laboratory Medicine, Cleveland Clinicgrid.239578.2, Cleveland, Ohio, USA., Couturier MR; Department of Pathology, University of Utah School of Medicine, Salt Lake City, Utah, USA.; ARUP Institute for Clinical and Experimental Pathology, Salt Lake City, Utah, USA.

Publikováno v: Microbiology spectrum [Microbiol Spectr] 2022 Apr 27; Vol. 10 (2), pp. e0211121. Date of Electronic Publication: 2022 Mar 07.

Closing the Brief Case: Capnocytophaga sputigena Bacteremia in a 94-Year-Old Male with Type 2 Diabetes Mellitus, Pancytopenia, and Bronchopneumonia.

Autor: Liu BM; Department of Pathology, University of Utah School of Medicine, Salt Lake City, Utah, USA., Carlisle CP; Department of General Internal Medicine, University of Utah School of Medicine, Salt Lake City, Utah, USA., Fisher MA; Department of Pathology, University of Utah School of Medicine, Salt Lake City, Utah, USA.; ARUP Laboratories, Salt Lake City, Utah, USA., Shakir SM; Department of Pathology, University of Utah School of Medicine, Salt Lake City, Utah, USA.; ARUP Laboratories, Salt Lake City, Utah, USA.

Publikováno v: Journal of clinical microbiology [J Clin Microbiol] 2021 Jun 18; Vol. 59 (7), pp. e0247320. Date of Electronic Publication: 2021 Jun 18.

SARS-CoV-2 innate effector associations and viral load in early nasopharyngeal infection.

Autor: Liou TG; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA.; Center for Quantitative Biology, University of Utah, Salt Lake City, UT, USA., Adler FR; Center for Quantitative Biology, University of Utah, Salt Lake City, UT, USA.; Department of Mathematics and School of Biological Sciences, University of Utah, Salt Lake City, UT, USA., Cahill BC; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Cox DR; Nuffield College, Oxford, UK., Cox JE; Department of Biochemistry, School of Medicine, University of Utah, Salt Lake City, UT, USA.; Metabolomics, Proteomics and Mass Spectrometry Core, School of Medicine, University of Utah, Salt Lake City, UT, USA., Grant GJ; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Hanson KE; Division of Infectious Diseases, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA.; Department of Pathology, University of Utah, Salt Lake City, UT, USA.; ARUP Laboratories, Salt Lake City, UT, USA., Hartsell SC; Division of Emergency Medicine, Department of Surgery, University of Utah, Salt Lake City, UT, USA., Hatton ND; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Helms MN; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Jensen JL; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Kartsonaki C; Clinical Trial Service Unit & Epidemiological Studies Unit and Medical Research Council Population Health Research Unit, Nuffield Department of Population Health, University of Oxford, Oxford, UK., Li Y; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Leung DT; Division of Infectious Diseases, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Marvin JE; Flow Cytometry Core Laboratory, University of Utah Health, Salt Lake City, UT, USA., Middleton EA; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Osburn-Staker SM; Metabolomics, Proteomics and Mass Spectrometry Core, School of Medicine, University of Utah, Salt Lake City, UT, USA., Packer KA; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Shakir SM; Department of Pathology, University of Utah, Salt Lake City, UT, USA.; ARUP Laboratories, Salt Lake City, UT, USA., Sturrock AB; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Tardif KD; ARUP Laboratories, Salt Lake City, UT, USA., Warren KJ; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA.; Department of Veterans Affairs Medical Center, Salt Lake City, UT, USA., Waddoups LJ; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Weaver LJ; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Zimmerman E; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA., Paine R 3rd; Division of Respiratory, Critical Care and Occupational Pulmonary Medicine, Department of Internal Medicine, School of Medicine, University of Utah, Salt Lake City, UT, USA.; Department of Veterans Affairs Medical Center, Salt Lake City, UT, USA.

Publikováno v: Physiological reports [Physiol Rep] 2021 Feb; Vol. 9 (4), pp. e14761.