Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Shaked, Afik"'
Autor:
Yonatan Stelzer, Shiran Bar, Osnat Bartok, Shaked Afik, Daniel Ronen, Sebastian Kadener, Nissim Benvenisty
Publikováno v:
Cell Reports, Vol 11, Iss 2, Pp 308-320 (2015)
Parental imprinting results in monoallelic parent-of-origin-dependent gene expression. However, many imprinted genes identified by differential methylation do not exhibit complete monoallelic expression. Previous studies demonstrated complex tissue-d
Externí odkaz:
https://doaj.org/article/230763b0775b4bc79f33b86c85cd3629
Autor:
Robert C, Jones, Jim, Karkanias, Mark A, Krasnow, Angela Oliveira, Pisco, Stephen R, Quake, Julia, Salzman, Nir, Yosef, Bryan, Bulthaup, Phillip, Brown, William, Harper, Marisa, Hemenez, Ravikumar, Ponnusamy, Ahmad, Salehi, Bhavani A, Sanagavarapu, Eileen, Spallino, Ksenia A, Aaron, Waldo, Concepcion, James M, Gardner, Burnett, Kelly, Nikole, Neidlinger, Zifa, Wang, Sheela, Crasta, Saroja, Kolluru, Maurizio, Morri, Serena Y, Tan, Kyle J, Travaglini, Chenling, Xu, Marcela, Alcántara-Hernández, Nicole, Almanzar, Jane, Antony, Benjamin, Beyersdorf, Deviana, Burhan, Kruti, Calcuttawala, Matthew M, Carter, Charles K F, Chan, Charles A, Chang, Stephen, Chang, Alex, Colville, Rebecca N, Culver, Ivana, Cvijović, Gaetano, D'Amato, Camille, Ezran, Francisco X, Galdos, Astrid, Gillich, William R, Goodyer, Yan, Hang, Alyssa, Hayashi, Sahar, Houshdaran, Xianxi, Huang, Juan C, Irwin, SoRi, Jang, Julia Vallve, Juanico, Aaron M, Kershner, Soochi, Kim, Bernhard, Kiss, William, Kong, Maya E, Kumar, Angera H, Kuo, Rebecca, Leylek, Baoxiang, Li, Gabriel B, Loeb, Wan-Jin, Lu, Sruthi, Mantri, Maxim, Markovic, Patrick L, McAlpine, Antoine, de Morree, Karim, Mrouj, Shravani, Mukherjee, Tyler, Muser, Patrick, Neuhöfer, Thi D, Nguyen, Kimberly, Perez, Ragini, Phansalkar, Nazan, Puluca, Zhen, Qi, Poorvi, Rao, Hayley, Raquer-McKay, Nicholas, Schaum, Bronwyn, Scott, Bobak, Seddighzadeh, Joe, Segal, Sushmita, Sen, Shaheen, Sikandar, Sean P, Spencer, Lea C, Steffes, Varun R, Subramaniam, Aditi, Swarup, Michael, Swift, Will, Van Treuren, Emily, Trimm, Stefan, Veizades, Sivakamasundari, Vijayakumar, Kim Chi, Vo, Sevahn K, Vorperian, Wanxin, Wang, Hannah N W, Weinstein, Juliane, Winkler, Timothy T H, Wu, Jamie, Xie, Andrea R, Yung, Yue, Zhang, Angela M, Detweiler, Honey, Mekonen, Norma F, Neff, Rene V, Sit, Michelle, Tan, Jia, Yan, Gregory R, Bean, Vivek, Charu, Erna, Forgó, Brock A, Martin, Michael G, Ozawa, Oscar, Silva, Angus, Toland, Venkata N P, Vemuri, Shaked, Afik, Kyle, Awayan, Olga Borisovna, Botvinnik, Ashley, Byrne, Michelle, Chen, Roozbeh, Dehghannasiri, Adam, Gayoso, Alejandro A, Granados, Qiqing, Li, Gita, Mahmoudabadi, Aaron, McGeever, Julia Eve, Olivieri, Madeline, Park, Neha, Ravikumar, Geoff, Stanley, Weilun, Tan, Alexander J, Tarashansky, Rohan, Vanheusden, Peter, Wang, Sheng, Wang, Galen, Xing, Rebecca, Culver, Les, Dethlefsen, Po-Yi, Ho, Shixuan, Liu, Jonathan S, Maltzman, Ross J, Metzger, Koki, Sasagawa, Rahul, Sinha, Hanbing, Song, Bruce, Wang, Steven E, Artandi, Philip A, Beachy, Michael F, Clarke, Linda C, Giudice, Franklin W, Huang, Kerwyn Casey, Huang, Juliana, Idoyaga, Seung K, Kim, Mark, Krasnow, Christin S, Kuo, Patricia, Nguyen, Thomas A, Rando, Kristy, Red-Horse, Jeremy, Reiter, David A, Relman, Justin L, Sonnenburg, Albert, Wu, Sean M, Wu, Tony, Wyss-Coray
Publikováno v:
Science
Tabula Sapiens Consortium* 2022, ' The Tabula Sapiens : A multiple-organ, single-cell transcriptomic atlas of humans ', Science (New York, N.Y.), vol. 376, no. 6594, pp. eabl4896 . https://doi.org/10.1126/science.abl4896
Tabula Sapiens Consortium* 2022, ' The Tabula Sapiens : A multiple-organ, single-cell transcriptomic atlas of humans ', Science (New York, N.Y.), vol. 376, no. 6594, pp. eabl4896 . https://doi.org/10.1126/science.abl4896
INTRODUCTION: Although the genome is often called the blueprint of an organism, it is perhaps more accurate to describe it as a parts list composed of the various genes that may or may not be used in the different cell types of a multicellular organi
Publikováno v:
Life science alliance, vol 2, iss 4
Life Science Alliance
Life Science Alliance
BRAPeS is a software for B-cell receptor reconstruction in single cells from very short (25–30 bp) read lengths, which achieves similar success rates and accuracy as applying other methods on long reads.
RNA sequencing of single B cells provid
RNA sequencing of single B cells provid
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9e900fb7eb3770fa91d261ae30f22040
https://escholarship.org/uc/item/49p8g6tb
https://escholarship.org/uc/item/49p8g6tb
RNA-sequencing of single B cells provides simultaneous measurements of the cell state and its binding specificity. However, in order to uncover the latter further reconstruction of the B cell receptor (BCR) sequence is needed. We present BRAPeS, an a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d993cf19e03306ce96fceb6c83a9a022
Autor:
Osnat Bartok, Shaked Afik, Sebastian Kadener, Yonatan Stelzer, Shiran Bar, Nissim Benvenisty, Daniel Ronen
Publikováno v:
Cell Reports, Vol 11, Iss 2, Pp 308-320 (2015)
SummaryParental imprinting results in monoallelic parent-of-origin-dependent gene expression. However, many imprinted genes identified by differential methylation do not exhibit complete monoallelic expression. Previous studies demonstrated complex t
Autor:
Paul Klenerman, Daniel C. Douek, Arlene H. Sharpe, Samuel Darko, Leo Swadling, Eleanor Barnes, Kevin Bi, Nir Yosef, Shaked Afik, Ulrike Gerdemann, W. Nicholas Haining, Kathleen B. Yates, Jernej Godec
The T cell compartment must contain diversity in both TCR repertoire and cell state to provide effective immunity against pathogens1,2. However, it remains unclear how differences in the TCR contribute to heterogeneity in T cell state at the single c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d33f0ede44450356d966c7e45de38378
Autor:
William E. Diehl, Sean M. McCauley, Patrick McDonel, Jeremy Luban, Manuel Garber, Anetta Nowosielska, Alper Kucukural, Nir Yosef, Pranitha Vangala, Xiaopeng Zhu, Shaked Afik, Barbara Tabak, Elisa Donnard
Publikováno v:
Cell Systems. 6:381-394.e7
Summary Most well-characterized enhancers are deeply conserved. In contrast, genome-wide comparative studies of steady-state systems showed that only a small fraction of active enhancers are conserved. To better understand conservation of enhancer ac
Autor:
Nir Friedman, Daniel Haimovich, Uri Weissbein, Shaked Afik, Michael Rosbash, Chen Gafni, Immanuel Lerner, Osnat Bartok, Victoria Wolfson, Jerome S. Menet, Sebastian Kadener
Publikováno v:
Nature Communications. 6
The transcription factor CLOCK (CLK) is essential for the development and maintenance of circadian rhythms in Drosophila. However, little is known about how CLK levels are controlled. Here, we show that Clk mRNA is strongly regulated post-transcripti
Autor:
David M. Blodgett, Shaked Afik, Dale L. Greiner, Susanne Pechhold, Anthony J. Cura, Norman J. Kennedy, Anetta Nowosielska, David M. Harlan, Manuel Garber, Soyoung Kim, Philip diIorio, Sally C. Kent, Roger J. Davis, Alper Kucukural
Publikováno v:
Diabetes
Understanding distinct gene expression patterns of normal adult and developing fetal human pancreatic α- and β-cells is crucial for developing stem cell therapies, islet regeneration strategies, and therapies designed to increase β-cell function i
Autor:
Tamara Goldfarb, Shaked Afik, Shany Doron, Rotem Sorek, Yoav Charpak-Amikam, Eyal Weinstock, Gal Ofir, Ofir Cohen, Hila Sberro
Publikováno v:
The EMBO journal. 34(2)
The perpetual arms race between bacteria and phage has resulted in the evolution of efficient resistance systems that protect bacteria from phage infection. Such systems, which include the CRISPR-Cas and restriction-modification systems, have proven