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Autor:
Tan, L., Sandhu, S., Lee, R.J., Li, J., Callahan, J., Ftouni, S., Dhomen, N., Middlehurst, P., Wallace, A., Raleigh, J., Hatzimihalis, A., Henderson, M.A., Shackleton, M., Haydon, A., Mar, V., Gyorki, D.E., Oudit, D., Dawson, M.A., Hicks, R.J., Lorigan, P., McArthur, G.A., Marais, R., Wong, S.Q., Dawson, S.-J. *
Publikováno v:
In Annals of Oncology May 2019 30(5):804-814
Autor:
Lewin, J., Sayers, L., Kee, D., Walpole, I., Sanelli, A., te Marvelde, L., Herschtal, A., Spillane, J., Gyorki, D., Speakman, D., Estall, V., Donahoe, S., Pohl, M., Pope, K., Chua, M., Sandhu, S., McArthur, G.A., McCormack, C.J., Henderson, M., Hicks, R.J., Shackleton, M. *
Publikováno v:
In Annals of Oncology July 2018 29(7):1569-1574
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Akademický článek
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Autor:
Butler, M.O., Weight, R., Haq, R., Javed, A., Chandana, S., Chmielowski, B., Dummer, R., Carlino, M.S., Mckean, M., Moser, J., Chandrasekaran, S., Khan, S., Kim, K.B., Lutzky, J., Shackleton, M., Atkinson, V.G., Beaupre, D., Cole, G.W., Jr, Patel, H., Orloff, M.
Publikováno v:
In Annals of Oncology September 2024 35 Supplement 2:S747-S747
Autor:
Patterson, B.M., Shackleton, M., Furness, A.J., Bekele, E., Pearce, J., Linge, K.L., Busetti, F., Spadek, T., Toze, S.
Publikováno v:
In Journal of Contaminant Hydrology 2011 122(1):53-62
Autor:
Reyna M. A., Haan D., Paczkowska M., Verbeke L. P. C., Vazquez M., Kahraman A., Pulido-Tamayo S., Barenboim J., Wadi L., Dhingra P., Shrestha R., Getz G., Lawrence M. S., Pedersen J. S., Rubin M. A., Wheeler D. A., Brunak S., Izarzugaza J. M. G., Khurana E., Marchal K., von Mering C., Sahinalp S. C., Valencia A., Abascal F., Amin S. B., Bader G. D., Bandopadhayay P., Beroukhim R., Bertl J., Boroevich K. A., Busanovich J., Campbell P. J., Carlevaro-Fita J., Chakravarty D., Chan C. W. Y., Chen K., Choi J. K., Deu-Pons J., Diamanti K., Feuerbach L., Fink J. L., Fonseca N. A., Frigola J., Gambacorti Passerini C., Garsed D. W., Gerstein M., Guo Q., Gut I. G., Hamilton M. P., Haradhvala N. J., Harmanci A. O., Helmy M., Herrmann C., Hess J. M., Hobolth A., Hodzic E., Hong C., Hornshoj H., Isaev K., Johnson R., Johnson T. A., Juul M., Juul R. I., Kahles A., Kellis M., Kim J., Kim J. K., Kim Y., Komorowski J., Korbel J. O., Kumar S., Lanzos A., Larsson E., Lee D., Lehmann K. -V., Li S., Li X., Lin Z., Liu E. M., Lochovsky L., Lou S., Madsen T., Martincorena I., Martinez-Fundichely A., Maruvka Y. E., McGillivray P. D., Meyerson W., Muinos F., Mularoni L., Nakagawa H., Nielsen M. M., Park K., Pons T., Reyes-Salazar I., Rheinbay E., Rubio-Perez C., Saksena G., Salichos L., Sander C., Schumacher S. E., Shackleton M., Shapira O., Shen C., Shuai S., Sidiropoulos N., Sieverling L., Sinnott-Armstrong N., Stein L. D., Tamborero D., Tiao G., Tsunoda T., Umer H. M., Uuskula-Reimand L., Wadelius C., Wang J., Warrell J., Waszak S. M., Weischenfeldt J., Wu G., Yu J., Zhang J., Zhang X., Zhang Y., Zhao Z., Zou L., Reimand J., Stuart J. M., Raphael B. J.
Publikováno v:
Reyna, Matthew A; Haan, David; Paczkowska, Marta; Verbeke, Lieven P C; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S; Pedersen, Jakob Skou; Rubin, Mark Andrew; Wheeler, David A; Brunak, Søren; Izarzugaza, Jose M G; Khurana, Ekta; Marchal, Kathleen; ... (2020). Pathway and network analysis of more than 2500 whole cancer genomes. Nature communications, 11(1), p. 729. Nature Publishing Group 10.1038/s41467-020-14367-0
Nature Communications, 11, 1
Nature communications, vol 11, iss 1
Reyna, M A, Haan, D, Paczkowska, M, Verbeke, L P C, Vazquez, M, Kahraman, A, Pulido-Tamayo, S, Barenboim, J, Wadi, L, Dhingra, P, Shrestha, R, Getz, G, Lawrence, M S, Pedersen, J S, Rubin, M A, Wheeler, D A, Brunak, S, Izarzugaza, J M G, Khurana, E, Marchal, K, von Mering, C, Sahinalp, S C, Valencia, A, PCAWG Drivers and Functional Interpretation Working Group, Reimand, J, Stewart, J, Raphael, B & PCAWG Consortium 2020, ' Pathway and network analysis of more than 2500 whole cancer genomes ', Nature Communications, vol. 11, no. 1, 729 . https://doi.org/10.1038/s41467-020-14367-0
NATURE COMMUNICATIONS
Nature Communications
Nature Communications, 11 (1)
Nature Communications, Vol 11, Iss 1, Pp 1-17 (2020)
Nature Communications, 11
Reyna, M A, Haan, D, Paczkowska, M, Verbeke, L P C, Vazquez, M, Kahraman, A, Pulido-Tamayo, S, Barenboim, J, Wadi, L, Dhingra, P, Shrestha, R, Getz, G, Lawrence, M S, Pedersen, J S, Rubin, M A, Wheeler, D A, Brunak, S, Izarzugaza, J M G, Khurana, E, Marchal, K, von Mering, C, Sahinalp, S C, Valencia, A, Abascal, F, Amin, S B, Bader, G D, Bandopadhayay, P, Beroukhim, R, Bertl, J, Boroevich, K A, Busanovich, J, Campbell, P J, Carlevaro-Fita, J, Chakravarty, D, Chan, C W Y, Chen, K, Choi, J K, Deu-Pons, J, Diamanti, K, Feuerbach, L, Fink, J L, Fonseca, N A, Frigola, J, Gambacorti-Passerini, C, Garsed, D W, Gerstein, M, Larsson, E, Nielsen, M M, Sidiropoulos, N, Weischenfeldt, J, PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium 2020, ' Pathway and network analysis of more than 2500 whole cancer genomes ', Nature Communications, vol. 11, no. 1, 729, pp. 1-17 . https://doi.org/10.1038/s41467-020-14367-0
Reyna, M A, Haan, D, Paczkowska, M, Verbeke, L P C, Vazquez, M, Kahraman, A, Pulido-Tamayo, S, Barenboim, J, Wadi, L, Dhingra, P, Shrestha, R, Getz, G, Lawrence, M S, Pedersen, J S, Rubin, M A, Wheeler, D A, Brunak, S, Izarzugaza, J M G, Khurana, E, Marchal, K, von Mering, C, Sahinalp, S C, Valencia, A, Reimand, J, Stuart, J M & Raphael, B J 2020, ' Pathway and network analysis of more than 2500 whole cancer genomes ', Nature Communications, vol. 11, no. 1, 729 . https://doi.org/10.1038/s41467-020-14367-0
Nature Communications, 11, 1
Nature communications, vol 11, iss 1
Reyna, M A, Haan, D, Paczkowska, M, Verbeke, L P C, Vazquez, M, Kahraman, A, Pulido-Tamayo, S, Barenboim, J, Wadi, L, Dhingra, P, Shrestha, R, Getz, G, Lawrence, M S, Pedersen, J S, Rubin, M A, Wheeler, D A, Brunak, S, Izarzugaza, J M G, Khurana, E, Marchal, K, von Mering, C, Sahinalp, S C, Valencia, A, PCAWG Drivers and Functional Interpretation Working Group, Reimand, J, Stewart, J, Raphael, B & PCAWG Consortium 2020, ' Pathway and network analysis of more than 2500 whole cancer genomes ', Nature Communications, vol. 11, no. 1, 729 . https://doi.org/10.1038/s41467-020-14367-0
NATURE COMMUNICATIONS
Nature Communications
Nature Communications, 11 (1)
Nature Communications, Vol 11, Iss 1, Pp 1-17 (2020)
Nature Communications, 11
Reyna, M A, Haan, D, Paczkowska, M, Verbeke, L P C, Vazquez, M, Kahraman, A, Pulido-Tamayo, S, Barenboim, J, Wadi, L, Dhingra, P, Shrestha, R, Getz, G, Lawrence, M S, Pedersen, J S, Rubin, M A, Wheeler, D A, Brunak, S, Izarzugaza, J M G, Khurana, E, Marchal, K, von Mering, C, Sahinalp, S C, Valencia, A, Abascal, F, Amin, S B, Bader, G D, Bandopadhayay, P, Beroukhim, R, Bertl, J, Boroevich, K A, Busanovich, J, Campbell, P J, Carlevaro-Fita, J, Chakravarty, D, Chan, C W Y, Chen, K, Choi, J K, Deu-Pons, J, Diamanti, K, Feuerbach, L, Fink, J L, Fonseca, N A, Frigola, J, Gambacorti-Passerini, C, Garsed, D W, Gerstein, M, Larsson, E, Nielsen, M M, Sidiropoulos, N, Weischenfeldt, J, PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium 2020, ' Pathway and network analysis of more than 2500 whole cancer genomes ', Nature Communications, vol. 11, no. 1, 729, pp. 1-17 . https://doi.org/10.1038/s41467-020-14367-0
Reyna, M A, Haan, D, Paczkowska, M, Verbeke, L P C, Vazquez, M, Kahraman, A, Pulido-Tamayo, S, Barenboim, J, Wadi, L, Dhingra, P, Shrestha, R, Getz, G, Lawrence, M S, Pedersen, J S, Rubin, M A, Wheeler, D A, Brunak, S, Izarzugaza, J M G, Khurana, E, Marchal, K, von Mering, C, Sahinalp, S C, Valencia, A, Reimand, J, Stuart, J M & Raphael, B J 2020, ' Pathway and network analysis of more than 2500 whole cancer genomes ', Nature Communications, vol. 11, no. 1, 729 . https://doi.org/10.1038/s41467-020-14367-0
The catalog of cancer driver mutations in protein-coding genes has greatly expanded in the past decade. However, non-coding cancer driver mutations are less well-characterized and only a handful of recurrent non-coding mutations, most notably TERT pr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2ab9bdc4055f3e9c174d4c3aed78c672
https://boris.unibe.ch/146112/1/41467_2020_Article_14367.pdf
https://boris.unibe.ch/146112/1/41467_2020_Article_14367.pdf
Autor:
Carlevaro-Fita J., Lanzos A., Feuerbach L., Hong C., Mas-Ponte D., Pedersen J. S., Abascal F., Amin S. B., Bader G. D., Barenboim J., Beroukhim R., Bertl J., Boroevich K. A., Brunak S., Campbell P. J., Chakravarty D., Chan C. W. Y., Chen K., Choi J. K., Deu-Pons J., Dhingra P., Diamanti K., Fink J. L., Fonseca N. A., Frigola J., Gambacorti Passerini C., Garsed D. W., Gerstein M., Getz G., Gonzalez-Perez A., Guo Q., Gut I. G., Haan D., Hamilton M. P., Haradhvala N. J., Harmanci A. O., Helmy M., Herrmann C., Hess J. M., Hobolth A., Hodzic E., Hornshoj H., Isaev K., Izarzugaza J. M. G., Johnson R., Johnson T. A., Juul M., Juul R. I., Kahles A., Kahraman A., Kellis M., Khurana E., Kim J., Kim J. K., Kim Y., Komorowski J., Korbel J. O., Kumar S., Larsson E., Lawrence M. S., Lee D., Lehmann K. -V., Li S., Li X., Lin Z., Liu E. M., Lochovsky L., Lou S., Madsen T., Marchal K., Martincorena I., Martinez-Fundichely A., Maruvka Y. E., McGillivray P. D., Meyerson W., Muinos F., Mularoni L., Nakagawa H., Nielsen M. M., Paczkowska M., Park K., Pich O., Pons T., Pulido-Tamayo S., Raphael B. J., Reimand J., Reyes-Salazar I., Reyna M. A., Rheinbay E., Rubin M. A., Rubio-Perez C., Sabarinathan R., Sahinalp S. C., Saksena G., Salichos L., Sander C., Schumacher S. E., Shackleton M., Shapira O., Shen C., Shrestha R., Shuai S., Sidiropoulos N., Sieverling L., Sinnott-Armstrong N., Stein L. D., Stuart J. M., Tamborero D., Tiao G., Tsunoda T., Umer H. M., Uuskula-Reimand L., Valencia A., Vazquez M., Verbeke L. P. C., Wadelius C., Wadi L., Wang J., Warrell J., Waszak S. M., Weischenfeldt J., Wheeler D. A., Wu G., Yu J., Zhang J., Zhang X., Zhang Y., Zhao Z., Zou L., von Mering C.
Publikováno v:
Carlevaro-Fita, J, Lanzós, A, Feuerbach, L, Hong, C, Mas-Ponte, D, Pedersen, J S, Johnson, R, Sidiropoulos, N, Weischenfeldt, J L & Brunak, S 2020, ' Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis ', Communications Biology, vol. 3, no. 1, 56, pp. 1-16 . https://doi.org/10.1038/s42003-019-0741-7
COMMUNICATIONS BIOLOGY
Communications Biology, 3
Communications Biology, 3 (1)
Communications Biology, Vol 3, Iss 1, Pp 1-16 (2020)
Communications Biology, 3, 1
Communications Biology
Carlevaro-Fita, J, Lanzós, A, Feuerbach, L, Hong, C, Mas-Ponte, D, Pedersen, J S, PCAWG Drivers and Functional Interpretation Group, Johnson, R & PCAWG Consortium 2020, ' Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis ', Communications Biology, vol. 3, no. 1, 56 . https://doi.org/10.1038/s42003-019-0741-7
Carlevaro Fita, Joana; Lanzós, Andrés; Feuerbach, Lars; Hong, Chen; Mas-Ponte, David; Pedersen, Jakob Skou; Johnson, Rory (2020). Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Communications biology, 3(1), p. 56. Springer Nature 10.1038/s42003-019-0741-7
COMMUNICATIONS BIOLOGY
Communications Biology, 3
Communications Biology, 3 (1)
Communications Biology, Vol 3, Iss 1, Pp 1-16 (2020)
Communications Biology, 3, 1
Communications Biology
Carlevaro-Fita, J, Lanzós, A, Feuerbach, L, Hong, C, Mas-Ponte, D, Pedersen, J S, PCAWG Drivers and Functional Interpretation Group, Johnson, R & PCAWG Consortium 2020, ' Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis ', Communications Biology, vol. 3, no. 1, 56 . https://doi.org/10.1038/s42003-019-0741-7
Carlevaro Fita, Joana; Lanzós, Andrés; Feuerbach, Lars; Hong, Chen; Mas-Ponte, David; Pedersen, Jakob Skou; Johnson, Rory (2020). Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Communications biology, 3(1), p. 56. Springer Nature 10.1038/s42003-019-0741-7
Long non-coding RNAs (lncRNAs) are a growing focus of cancer genomics studies, creating the need for a resource of lncRNAs with validated cancer roles. Furthermore, it remains debated whether mutated lncRNAs can drive tumorigenesis, and whether such
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::784ac264a8fb478f6dcf6b4b524cabd9
https://www.repository.cam.ac.uk/handle/1810/317802
https://www.repository.cam.ac.uk/handle/1810/317802
Autor:
Shuai S., Abascal F., Amin S. B., Bader G. D., Bandopadhayay P., Barenboim J., Beroukhim R., Bertl J., Boroevich K. A., Brunak S., Campbell P. J., Carlevaro-Fita J., Chakravarty D., Chan C. W. Y., Chen K., Choi J. K., Deu-Pons J., Dhingra P., Diamanti K., Feuerbach L., Fink J. L., Fonseca N. A., Frigola J., Gambacorti Passerini C., Garsed D. W., Gerstein M., Getz G., Guo Q., Gut I. G., Haan D., Hamilton M. P., Haradhvala N. J., Harmanci A. O., Helmy M., Herrmann C., Hess J. M., Hobolth A., Hodzic E., Hong C., Hornshoj H., Isaev K., Izarzugaza J. M. G., Johnson R., Johnson T. A., Juul M., Juul R. I., Kahles A., Kahraman A., Kellis M., Khurana E., Kim J., Kim J. K., Kim Y., Komorowski J., Korbel J. O., Kumar S., Lanzos A., Larsson E., Lawrence M. S., Lee D., Lehmann K. -V., Li S., Li X., Lin Z., Liu E. M., Lochovsky L., Lou S., Madsen T., Marchal K., Martincorena I., Martinez-Fundichely A., Maruvka Y. E., McGillivray P. D., Meyerson W., Muinos F., Mularoni L., Nakagawa H., Nielsen M. M., Paczkowska M., Park K., Pedersen J. S., Pons T., Pulido-Tamayo S., Raphael B. J., Reimand J., Reyes-Salazar I., Reyna M. A., Rheinbay E., Rubin M. A., Rubio-Perez C., Sahinalp S. C., Saksena G., Salichos L., Sander C., Schumacher S. E., Shackleton M., Shapira O., Shen C., Shrestha R., Sidiropoulos N., Sieverling L., Sinnott-Armstrong N., Stein L. D., Stuart J. M., Tamborero D., Tiao G., Tsunoda T., Umer H. M., Uuskula-Reimand L., Valencia A., Vazquez M., Verbeke L. P. C., Wadelius C., Wadi L., Wang J., Warrell J., Waszak S. M., Weischenfeldt J., Wheeler D. A., Wu G., Yu J., Zhang J., Zhang X., Zhang Y., Zhao Z., Zou L., von Mering C., Gallinger S., Stein L.
Publikováno v:
Nature Communications
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Shuai, S, Abascal, F, Amin, S B, Bader, G D, Bandopadhayay, P, Barenboim, J, Beroukhim, R, Bertl, J, Boroevich, K A, Brunak, S, Campbell, P J, Carlevaro-Fita, J, Chakravarty, D, Chan, C W Y, Chen, K, Choi, J K, Deu-Pons, J, Dhingra, P, Diamanti, K, Feuerbach, L, Fink, J L, Fonseca, N A, Frigola, J, Gambacorti-Passerini, C, Garsed, D W, Gerstein, M, Getz, G, Guo, Q, Gut, I G, Haan, D, Hamilton, M P, Haradhvala, N J, Harmanci, A O, Helmy, M, Herrmann, C, Hess, J M, Hobolth, A, Hodzic, E, Hong, C, Hornshøj, H, Isaev, K, Izarzugaza, J M G, Johnson, R, Johnson, T A, Juul, M, Juul, R I, Kahles, A, Pedersen, J S, Sidiropoulos, N, Weischenfeldt, J, PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium 2020, ' Combined burden and functional impact tests for cancer driver discovery using DriverPower ', Nature Communications, vol. 11, no. 1, 734 . https://doi.org/10.1038/s41467-019-13929-1
Nature Communications, 11 (1)
Nature Communications, 11
Nature Communications, 11, 1
Nature communications, vol 11, iss 1
Shuai, Shimin; Gallinger, Steven; Stein, Lincoln (2020). Combined burden and functional impact tests for cancer driver discovery using DriverPower. Nature communications, 11(1), p. 734. Nature Publishing Group 10.1038/s41467-019-13929-1
Shuai, S, PCAWG Drivers and Functional Interpretation Working Group, Gallinger, S, Stein, L & PCAWG Consortium 2020, ' Combined burden and functional impact tests for cancer driver discovery using DriverPower ', Nature Communications, vol. 11, no. 1, 734 . https://doi.org/10.1038/s41467-019-13929-1
NATURE COMMUNICATIONS
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Shuai, S, Abascal, F, Amin, S B, Bader, G D, Bandopadhayay, P, Barenboim, J, Beroukhim, R, Bertl, J, Boroevich, K A, Brunak, S, Campbell, P J, Carlevaro-Fita, J, Chakravarty, D, Chan, C W Y, Chen, K, Choi, J K, Deu-Pons, J, Dhingra, P, Diamanti, K, Feuerbach, L, Fink, J L, Fonseca, N A, Frigola, J, Gambacorti-Passerini, C, Garsed, D W, Gerstein, M, Getz, G, Guo, Q, Gut, I G, Haan, D, Hamilton, M P, Haradhvala, N J, Harmanci, A O, Helmy, M, Herrmann, C, Hess, J M, Hobolth, A, Hodzic, E, Hong, C, Hornshøj, H, Isaev, K, Izarzugaza, J M G, Johnson, R, Johnson, T A, Juul, M, Juul, R I, Kahles, A, Pedersen, J S, Sidiropoulos, N, Weischenfeldt, J, PCAWG Drivers and Functional Interpretation Working Group & PCAWG Consortium 2020, ' Combined burden and functional impact tests for cancer driver discovery using DriverPower ', Nature Communications, vol. 11, no. 1, 734 . https://doi.org/10.1038/s41467-019-13929-1
Nature Communications, 11 (1)
Nature Communications, 11
Nature Communications, 11, 1
Nature communications, vol 11, iss 1
Shuai, Shimin; Gallinger, Steven; Stein, Lincoln (2020). Combined burden and functional impact tests for cancer driver discovery using DriverPower. Nature communications, 11(1), p. 734. Nature Publishing Group 10.1038/s41467-019-13929-1
Shuai, S, PCAWG Drivers and Functional Interpretation Working Group, Gallinger, S, Stein, L & PCAWG Consortium 2020, ' Combined burden and functional impact tests for cancer driver discovery using DriverPower ', Nature Communications, vol. 11, no. 1, 734 . https://doi.org/10.1038/s41467-019-13929-1
NATURE COMMUNICATIONS
The discovery of driver mutations is one of the key motivations for cancer genome sequencing. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancers acro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a66b76677d0b16adc338a5e2ae7f60b2
http://europepmc.org/articles/PMC7002750
http://europepmc.org/articles/PMC7002750