Zobrazeno 1 - 10
of 32
pro vyhledávání: '"Seth Sims"'
Publikováno v:
Journal of Computational Biology. 30:502-517
Publikováno v:
BMC Bioinformatics, Vol 19, Iss S11, Pp 1-10 (2018)
Abstract Background Many biological analysis tasks require extraction of families of genetically similar sequences from large datasets produced by Next-generation Sequencing (NGS). Such tasks include detection of viral transmissions by analysis of al
Externí odkaz:
https://doaj.org/article/7a68e817401d4966ba526696c5de9070
Autor:
Seth Sims, Atkinson G. Longmire, David S. Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, Yury Khudyakov
Publikováno v:
BMC Bioinformatics, Vol 19, Iss S11, Pp 1-15 (2018)
Abstract Background Molecular surveillance and outbreak investigation are important for elimination of hepatitis C virus (HCV) infection in the United States. A web-based system, Global Hepatitis Outbreak and Surveillance Technology (GHOST), has been
Externí odkaz:
https://doaj.org/article/0123f253243749639ba01dfc5fb62ee5
Autor:
Atkinson G. Longmire, Seth Sims, Inna Rytsareva, David S. Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili T. Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, Yury Khudyakov
Publikováno v:
BMC Genomics, Vol 18, Iss S10, Pp 21-32 (2017)
Abstract Background Hepatitis C is a major public health problem in the United States and worldwide. Outbreaks of hepatitis C virus (HCV) infections associated with unsafe injection practices, drug diversion, and other exposures to blood are difficul
Externí odkaz:
https://doaj.org/article/824a2dbcbee8421daa6ebbc9a9cc8933
Autor:
Inna Rytsareva, David S. Campo, Yueli Zheng, Seth Sims, Sharma V. Thankachan, Cansu Tetik, Jain Chirag, Sriram P. Chockalingam, Amanda Sue, Srinivas Aluru, Yury Khudyakov
Publikováno v:
BMC Genomics, Vol 18, Iss S4, Pp 1-7 (2017)
Abstract Background Hepatitis C is a major public health problem in the United States and worldwide. Outbreaks of hepatitis C virus (HCV) infections associated with unsafe injection practices, drug diversion, and other exposures to blood are difficul
Externí odkaz:
https://doaj.org/article/0782b1e0473242158598b9802a482245
Autor:
Amanda Sue, Victor Bolet, Chris Lynberg, Thom Sukalac, Lili T. Punkova, Atkinson G. Longmire, Pavel Skums, Robin Tracy, Yulin Lin, Hong Thai, Massimo Mirabito, Seth Sims, Yury Khudyakov, Silver Wang, Sumathi Ramachandran, David S. Campo, Lilia Ganova-Raeva, Inna Rytsareva, Zoya Dimitrova, Magdalena Medrzycki
Publikováno v:
BMC Genomics, Vol 18, Iss S10, Pp 21-32 (2017)
BMC Genomics
BMC Genomics
Background Hepatitis C is a major public health problem in the United States and worldwide. Outbreaks of hepatitis C virus (HCV) infections associated with unsafe injection practices, drug diversion, and other exposures to blood are difficult to dete
Autor:
Alexander Zelikovsky, Magdalena Medrzycki, Yulin Lin, Sumathi Ramachandran, Yury Khudyakov, Amanda Sue, Lilia Ganova-Raeva, Hong Thai, Seth Sims, Atkinson G. Longmire, David S. Campo
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, Vol 19, Iss S11, Pp 1-15 (2018)
BMC Bioinformatics, Vol 19, Iss S11, Pp 1-15 (2018)
Background Molecular surveillance and outbreak investigation are important for elimination of hepatitis C virus (HCV) infection in the United States. A web-based system, Global Hepatitis Outbreak and Surveillance Technology (GHOST), has been develope
Publikováno v:
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 65
Human immunodeficiency virus (HIV) infection is rising as a leading cause of morbidity and mortality among hepatitis C virus (HCV)-infected patients. Both viruses interact in co-infected hosts, which may affect their intra-host evolution, potentially
Autor:
David S. Campo, Alexander Zelikovsky, Yury Khudyakov, Seth Sims, Viachaslau Tsyvina, Pavel Skums
Publikováno v:
ICCABS
Web of Science
Web of Science
Many biological analysis techniques require measurement of similarity between sequences from large genomic datasets, which often involves extraction of all pairs of close DNA or RNA sequences. We present a k-mer-based tool to efficiently perform such
Autor:
Marcus C. Davis, Frank J. Tulenko, Seth Sims, Sylvie Mazan, Gaius J. Augustus, James L. Massey
Publikováno v:
Scientific Reports
Scientific Reports, 2016, 6, pp.22720. ⟨10.1038/srep22720⟩
Scientific Reports, Nature Publishing Group, 2016, 6, pp.22720. ⟨10.1038/srep22720⟩
Scientific Reports, 2016, 6, pp.22720. ⟨10.1038/srep22720⟩
Scientific Reports, Nature Publishing Group, 2016, 6, pp.22720. ⟨10.1038/srep22720⟩
The role of Homeobox transcription factors during fin and limb development have been the focus of recent work investigating the evolutionary origin of limb-specific morphologies. Here we characterize the expression of HoxD genes, as well as the clust