Zobrazeno 1 - 10
of 506
pro vyhledávání: '"Sergey Ovchinnikov"'
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)
Abstract Deciphering the relationship between a gene and its genomic context is fundamental to understanding and engineering biological systems. Machine learning has shown promise in learning latent relationships underlying the sequence-structure-fun
Externí odkaz:
https://doaj.org/article/e89d2e92e119410faf6ff04cf3e744c7
Autor:
Fotis A. Baltoumas, Evangelos Karatzas, David Paez-Espino, Nefeli K. Venetsianou, Eleni Aplakidou, Anastasis Oulas, Robert D. Finn, Sergey Ovchinnikov, Evangelos Pafilis, Nikos C. Kyrpides, Georgios A. Pavlopoulos
Publikováno v:
Frontiers in Bioinformatics, Vol 3 (2023)
Metagenomics has enabled accessing the genetic repertoire of natural microbial communities. Metagenome shotgun sequencing has become the method of choice for studying and classifying microorganisms from various environments. To this end, several meth
Externí odkaz:
https://doaj.org/article/f02d335b56704ff4a762c935e45990f2
Autor:
Chen Keasar, Liam J. McGuffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Debswapna Bhattacharya, Lauren Blake, Leandro Oliveira Bortot, Renzhi Cao, B. K. Dhanasekaran, Itzhel Dimas, Rodrigo Antonio Faccioli, Eshel Faraggi, Robert Ganzynkowicz, Sambit Ghosh, Soma Ghosh, Artur Giełdoń, Lukasz Golon, Yi He, Lim Heo, Jie Hou, Main Khan, Firas Khatib, George A. Khoury, Chris Kieslich, David E. Kim, Pawel Krupa, Gyu Rie Lee, Hongbo Li, Jilong Li, Agnieszka Lipska, Adam Liwo, Ali Hassan A. Maghrabi, Milot Mirdita, Shokoufeh Mirzaei, Magdalena A. Mozolewska, Melis Onel, Sergey Ovchinnikov, Anand Shah, Utkarsh Shah, Tomer Sidi, Adam K. Sieradzan, Magdalena Ślusarz, Rafal Ślusarz, James Smadbeck, Phanourios Tamamis, Nicholas Trieber, Tomasz Wirecki, Yanping Yin, Yang Zhang, Jaume Bacardit, Maciej Baranowski, Nicholas Chapman, Seth Cooper, Alexandre Defelicibus, Jeff Flatten, Brian Koepnick, Zoran Popović, Bartlomiej Zaborowski, David Baker, Jianlin Cheng, Cezary Czaplewski, Alexandre Cláudio Botazzo Delbem, Christodoulos Floudas, Andrzej Kloczkowski, Stanislaw Ołdziej, Michael Levitt, Harold Scheraga, Chaok Seok, Johannes Söding, Saraswathi Vishveshwara, Dong Xu, Foldit Players consortium, Silvia N. Crivelli
Publikováno v:
Scientific Reports, Vol 8, Iss 1, Pp 1-18 (2018)
Abstract Every two years groups worldwide participate in the Critical Assessment of Protein Structure Prediction (CASP) experiment to blindly test the strengths and weaknesses of their computational methods. CASP has significantly advanced the field
Externí odkaz:
https://doaj.org/article/b0b847aec1154062a3c86bac14d94e55
Publikováno v:
IUCrJ, Vol 4, Iss 3, Pp 291-300 (2017)
Evolutionary pressure on residue interactions, intramolecular or intermolecular, that are important for protein structure or function can lead to covariance between the two positions. Recent methodological advances allow much more accurate contact pr
Externí odkaz:
https://doaj.org/article/dcb955a5a0264da9a43ae0a9cb1bb5b0
Autor:
Vyacheslav Dudnikov, Yury Orlov, Aleksandr Fedorov, Leonid Solovyov, Sergey Vereshchagin, Alexander Burkov, Sergey Novikov, Sergey Ovchinnikov
Publikováno v:
Materials, Vol 12, Iss 1, p 74 (2018)
The behavior of the resistivity and thermopower of the Gd0.2Sr0.8FeO3−δ ferrite samples with a perovskite structure and the sample stability in an inert gas atmosphere in the temperature range of 300–800 K have been examined. It has been establi
Externí odkaz:
https://doaj.org/article/2b9ce078af564a1cbe8398ce4c5d609a
Autor:
Sergey Ovchinnikov, Lisa Kinch, Hahnbeom Park, Yuxing Liao, Jimin Pei, David E Kim, Hetunandan Kamisetty, Nick V Grishin, David Baker
Publikováno v:
eLife, Vol 4 (2015)
The prediction of the structures of proteins without detectable sequence similarity to any protein of known structure remains an outstanding scientific challenge. Here we report significant progress in this area. We first describe de novo blind struc
Externí odkaz:
https://doaj.org/article/bf36d51e866a428788292677ef37e206
Publikováno v:
eLife, Vol 3 (2014)
Do the amino acid sequence identities of residues that make contact across protein interfaces covary during evolution? If so, such covariance could be used to predict contacts across interfaces and assemble models of biological complexes. We find tha
Externí odkaz:
https://doaj.org/article/140dcf77db30497d994cde9768982e03
Autor:
Yao Cheng, Haobo Wang, Hua Xu, Yuan Liu, Bin Ma, Xuemin Chen, Xin Zeng, Xianghe Wang, Bo Wang, Carina Shiau, Sergey Ovchinnikov, Xiao-Dong Su, Chu Wang
Publikováno v:
Nature Chemical Biology. 19:548-555
Metal ions have various important biological roles in proteins, including structural maintenance, molecular recognition and catalysis. Previous methods of predicting metal-binding sites in proteomes were based on either sequence or structural motifs.
Autor:
Quinton M. Dowling, Hannah E. Volkman, Elizabeth E. Gray, Sergey Ovchinnikov, Stephanie Cambier, Asim K. Bera, Banumathi Sankaran, Max R. Johnson, Matthew J. Bick, Alex Kang, Daniel B. Stetson, Neil P. King
Publikováno v:
Nature Structural & Molecular Biology. 30:72-80
Publikováno v:
Fisheries. 2022:67-70
The peculiarities of the growth of spirulina (Arthrospira platensis (Nordst.) in water from highly mineralized lakes of the forest-steppe and steppe zones of the Southern Trans-Urals are investigated. The highest growth rates were established within