Zobrazeno 1 - 10
of 52
pro vyhledávání: '"Serdar Turkarslan"'
Autor:
Laura D. Hughes, Ginger Tsueng, Jack DiGiovanna, Thomas D. Horvath, Luke V. Rasmussen, Tor C. Savidge, Thomas Stoeger, Serdar Turkarslan, Qinglong Wu, Chunlei Wu, Andrew I. Su, Lars Pache, the NIAID Systems Biology Data Dissemination Working Group
Publikováno v:
Scientific Data, Vol 10, Iss 1, Pp 1-7 (2023)
Externí odkaz:
https://doaj.org/article/c65ba8cb83f0451b9d283f3f55ebeb19
Autor:
James H. Park, Abdullah H. Feroze, Samuel N. Emerson, Anca B. Mihalas, C. Dirk Keene, Patrick J. Cimino, Adrian Lopez Garcia de Lomana, Kavya Kannan, Wei-Ju Wu, Serdar Turkarslan, Nitin S. Baliga, Anoop P. Patel
Publikováno v:
npj Precision Oncology, Vol 6, Iss 1, Pp 1-13 (2022)
Abstract Glioblastoma (GBM) is a heterogeneous tumor made up of cell states that evolve over time. Here, we modeled tumor evolutionary trajectories during standard-of-care treatment using multi-omic single-cell analysis of a primary tumor sample, cor
Externí odkaz:
https://doaj.org/article/59df0ff277134bfbac1c8ddba33352e3
Autor:
Alan P. R. Lorenzetti, Ulrike Kusebauch, Lívia S. Zaramela, Wei-Ju Wu, João P. P. de Almeida, Serdar Turkarslan, Adrián L. G. de Lomana, José V. Gomes-Filho, Ricardo Z. N. Vêncio, Robert L. Moritz, Tie Koide, Nitin S. Baliga
Publikováno v:
mSystems, Vol 8, Iss 2 (2023)
ABSTRACT The scale of post-transcriptional regulation and the implications of its interplay with other forms of regulation in environmental acclimation are underexplored for organisms of the domain Archaea. Here, we have investigated the scale of pos
Externí odkaz:
https://doaj.org/article/249e0bfd07b94f9cace7c4b1be67cff5
Autor:
Matthew A. Wall, Serdar Turkarslan, Wei-Ju Wu, Samuel A. Danziger, David J. Reiss, Mike J. Mason, Andrew P. Dervan, Matthew W. B. Trotter, Douglas Bassett, Robert M. Hershberg, Adrián López García de Lomana, Alexander V. Ratushny, Nitin S. Baliga
Publikováno v:
npj Precision Oncology, Vol 5, Iss 1, Pp 1-15 (2021)
Abstract Despite recent advancements in the treatment of multiple myeloma (MM), nearly all patients ultimately relapse and many become refractory to multiple lines of therapies. Therefore, we not only need the ability to predict which patients are at
Externí odkaz:
https://doaj.org/article/8be0e48133514e37800ac2c098080257
Autor:
Anne E. Otwell, Alex V. Carr, Erica L. W. Majumder, Maryann K. Ruiz, Regina L. Wilpiszeski, Linh T. Hoang, Bill Webb, Serdar Turkarslan, Sean M. Gibbons, Dwayne A. Elias, David A. Stahl, Gary Siuzdak, Nitin S. Baliga
Publikováno v:
mSystems, Vol 6, Iss 1 (2021)
ABSTRACT Competition between nitrate-reducing bacteria (NRB) and sulfate-reducing bacteria (SRB) for resources in anoxic environments is generally thought to be governed largely by thermodynamics. It is now recognized that intermediates of nitrogen a
Externí odkaz:
https://doaj.org/article/ba6e671d182047fbaa3417e72f526017
Autor:
Adrián López García de Lomana, Ulrike Kusebauch, Arjun V. Raman, Min Pan, Serdar Turkarslan, Alan P. R. Lorenzetti, Robert L. Moritz, Nitin S. Baliga
Publikováno v:
mSystems, Vol 5, Iss 4 (2020)
ABSTRACT When organisms encounter an unfavorable environment, they transition to a physiologically distinct, quiescent state wherein abundant transcripts from the previous active growth state continue to persist, albeit their active transcription is
Externí odkaz:
https://doaj.org/article/afdd33dca81b494c9cf8fa5d14208085
Autor:
Serdar Turkarslan, Arjun V Raman, Anne W Thompson, Christina E Arens, Mark A Gillespie, Frederick vonNetzer, Kristina L Hillesland, Sergey Stolyar, Adrian López García de Lomana, David J Reiss, Drew Gorman‐Lewis, Grant M Zane, Jeffrey A Ranish, Judy D Wall, David A Stahl, Nitin S Baliga
Publikováno v:
Molecular Systems Biology, Vol 13, Iss 3, Pp n/a-n/a (2017)
Abstract Managing trade‐offs through gene regulation is believed to confer resilience to a microbial community in a fluctuating resource environment. To investigate this hypothesis, we imposed a fluctuating environment that required the sulfate‐r
Externí odkaz:
https://doaj.org/article/a655ac4e70d1467cac12e10d18846903
Autor:
Heeyong Yoon, Simon A B Knight, Alok Pandey, Jayashree Pain, Serdar Turkarslan, Debkumar Pain, Andrew Dancis
Publikováno v:
PLoS Genetics, Vol 11, Iss 5, p e1005135 (2015)
Frataxin (Yfh1 in yeast) is a conserved protein and deficiency leads to the neurodegenerative disease Friedreich's ataxia. Frataxin is a critical protein for Fe-S cluster assembly in mitochondria, interacting with other components of the Fe-S cluster
Externí odkaz:
https://doaj.org/article/ba18fc3da26846d8b9955376142093d2
Autor:
Seda Ekici, Serdar Turkarslan, Grzegorz Pawlik, Andrew Dancis, Nitin S. Baliga, Hans-Georg Koch, Fevzi Daldal
Publikováno v:
mBio, Vol 5, Iss 1 (2014)
ABSTRACT Copper is an essential micronutrient used as a metal cofactor by a variety of enzymes, including cytochrome c oxidase (Cox). In all organisms from bacteria to humans, cellular availability and insertion of copper into target proteins are tig
Externí odkaz:
https://doaj.org/article/835f5793892c47fdace33394a208df11
Autor:
Yaxi Wang, Larry A. Gallagher, Pia A. Andrade, Andi Liu, Ian R. Humphreys, Serdar Turkarslan, Kevin J. Cutler, Mario L. Arrieta-Ortiz, Yaqiao Li, Matthew C. Radey, Jeffrey S. McLean, Qian Cong, David Baker, Nitin S. Baliga, S. Brook Peterson, Joseph D. Mougous
Publikováno v:
bioRxiv
SummaryThe study of bacteria has yielded fundamental insights into cellular biology and physiology, biotechnological advances and many therapeutics. Yet due to a lack of suitable tools, the significant portion of bacterial diversity held within the c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e3d6e7312aea8d749de677ada37fee94
https://europepmc.org/articles/PMC10187176/
https://europepmc.org/articles/PMC10187176/