Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Semyon Kruglyak"'
Autor:
Sinan Arslan, Francisco J. Garcia, Minghao Guo, Matthew W. Kellinger, Semyon Kruglyak, Jake A. LeVieux, Adeline H. Mah, Haosen Wang, Junhua Zhao, Chunhong Zhou, Andrew Altomare, John Bailey, Matthew B. Byrne, Chiting Chang, Steve X. Chen, Byungrae Cho, Claudia N. Dennler, Vivian T. Dien, Derek Fuller, Ryan Kelley, Omid Khandan, Michael G. Klein, Michael Kim, Bryan R. Lajoie, Bill Lin, Yu Liu, Tyler Lopez, Peter T. Mains, Andrew D. Price, Samantha R. Robertson, Hermes Taylor-Weiner, Ramreddy Tippana, Austin B. Tomaney, Su Zhang, Minna Abtahi, Mark R. Ambroso, Rosita Bajari, Ava M. Bellizzi, Chris B. Benitez, Daniel R. Berard, Lorenzo Berti, Kelly N. Blease, Angela P. Blum, Andrew M. Boddicker, Leo Bondar, Chris Brown, Chris A. Bui, Juan Calleja-Aguirre, Kevin Cappa, Joshua Chan, Victor W. Chang, Katherine Charov, Xiyi Chen, Rodger M. Constandse, Weston Damron, Mariam Dawood, Nicole DeBuono, John D. Dimalanta, Laure Edoli, Keerthana Elango, Nikka Faustino, Chao Feng, Matthew Ferrari, Keith Frankie, Adam Fries, Anne Galloway, Vlad Gavrila, Gregory J. Gemmen, James Ghadiali, Arash Ghorbani, Logan A. Goddard, Adriana Roginski Guetter, Garren L. Hendricks, Jendrik Hentschel, Daniel J. Honigfort, Yun-Ting Hsieh, Yu-Hsien Hwang Fu, Scott K. Im, Chaoyi Jin, Shradha Kabu, Daniel E. Kincade, Shawn Levy, Yu Li, Vincent K. Liang, William H. Light, Jonathan B. Lipsher, Tsung-li Liu, Grace Long, Rui Ma, John M. Mailloux, Kyle A. Mandla, Anyssa R. Martinez, Max Mass, Daniel T. McKean, Michael Meron, Edmund A. Miller, Celyne S. Moh, Rachel K. Moore, Juan Moreno, Jordan M. Neysmith, Cassandra S. Niman, Jesus M. Nunez, Micah T. Ojeda, Sara Espinosa Ortiz, Jenna Owens, Geoffrey Piland, Daniel J. Proctor, Josua B. Purba, Michael Ray, Daisong Rong, Virginia M. Saade, Sanchari Saha, Gustav Santo Tomas, Nicholas Scheidler, Luqmanal H. Sirajudeen, Samantha Snow, Gudrun Stengel, Ryan Stinson, Michael J. Stone, Keoni J. Sundseth, Eileen Thai, Connor J. Thompson, Marco Tjioe, Christy L. Trejo, Greg Trieger, Diane Ni Truong, Ben Tse, Benjamin Voiles, Henry Vuong, Jennifer C. Wong, Chiung-Ting Wu, Hua Yu, Yingxian Yu, Ming Yu, Xi Zhang, Da Zhao, Genhua Zheng, Molly He, Michael Previte
Publikováno v:
Nature Biotechnology.
We present avidity sequencing, a sequencing chemistry that separately optimizes the processes of stepping along a DNA template and that of identifying each nucleotide within the template. Nucleotide identification uses multivalent nucleotide ligands
Autor:
Pooja Biswas, Adda Villanueva, Benjamin J. Krajacich, Juan Moreno, Junhua Zhao, Anne Marie Berry, Danielle Lazaro, Bryan R. Lajoie, Semyon Kruglyak, Radha Ayyagari
Whole genome sequencing has been an effective tool in the discovery of variants that cause rare disease. In this study, we determined the suitability of a novel avidity sequencing approach for rare disease applications. We built a sample to results w
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6e20633180af63da1391fffe345cb3df
https://doi.org/10.1101/2022.12.27.22283803
https://doi.org/10.1101/2022.12.27.22283803
Autor:
Jeremiah H. Li, Karrah Findley, Joseph K. Pickrell, Kelly Blease, Junhua Zhao, Semyon Kruglyak
Low-pass sequencing with genotype imputation has been adopted as a cost-effective method for genotyping. The most widely used method of short-read sequencing uses sequencing by synthesis (SBS). Here we perform a study of a novel sequencing technology
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9afff9a7723b38d675cfd73263388bc0
https://doi.org/10.1101/2022.12.07.519512
https://doi.org/10.1101/2022.12.07.519512
Autor:
Sinan Arslan, Matthew Kellinger, Semyon Kruglyak, Jake LeVieux, Adeline Mah, Haosen Wang, Junhua Zhao, Chunhong Zhou, John Bailey, Matthew Byrne, Chiting Chang, Steve Chen, Claudia Dennler, Samantha Dennler, Vivian Dien, Derek Fuller, Francisco Garcia, Minghao Guo, Ryan Kelley, Omid Khandan, Michael Klein, Michael Kim, Bill Lin, Yu Liu, Tyler Lopez, Peter Mains, Andrew Price, Hermes Taylor, Ramreddy Tippana, Austin Tomaney, Richard Zhang, Minna Abtahi, Mark Ambroso, Rosi Bajari, Ava Bellizi, Chris Benitez, Daniel Berard, Lorenzo Berti, Kelly Blease, Angela Blum, Andrew Boddicker, Leo Bondar, Chris Bui, Kevin Cappa, Joshua Chan, Victor Chang, Katia Charov, Xiyi Chen, Rodger Constandse, Weston Damron, Mariam Dawood, Nicole Debruno, John Dmalanta, Laure Edoli, Keerthi Elango, Nikka Faustino, Chao Feng, Matthew Ferrari, Kieth Frankie, Adam Fries, Anne Galloway, Vlad Gavrila, Gregory Gemmen, James Ghadiali, Logan Goddard, Adriana Roginski, Garren Hendricks, Jendrick Hentschel, Doris Hseih, Yu-Hsein Hwang-fu, Scott Im, Chaoyi Jin, Daniel Kincade, Bryan Lajooie, Shawn Levy, Yu Li, Vincent Liang, William Light, Jonathan Lipsher, Tsungli Liu, Guixia Long, Rui Ma, Jack Mailloux, Kyle Mandla, Anyssa Martinez, Max Mass, Michael Meron, Celyne Moh, Rachel Moore, Juan Moreno, Jordan Neysmith, Cassandra Niman, Jesus Nunez, Micah Ojeda, Jenna Owens, Sara Espinosa Ortiz, Geoffrey Piland, Dan Proctor, Josua Purba, Michael Ray, Daisong Rong, Virginia Saade, Sanchari Saha, Luqmanal Sirajudeen, Gudrun Stengel, Ryan Stinson, Michael Stone, Keoni Sundseth, Eileen Thai, Connor Thompson, Gustav Santo Tomas, Christy Trejo, Greg Trieger, Diane Truong, Ben Tse, Benjamin Voiles, Henry Vuong, Jennifer Wong, Chiung-Ting Wu, Hua Yu, Ming Yu, Cindy Zhang, Da Zhao, Frank Zheng, Molly He, Michael Previte
We present a novel sequencing chemistry implemented as part of the AVITI system. Relying on the proximal DNA binding sites created through DNA amplification on a solid support, avidity sequencing uses multivalent nucleotide ligands on dye-labeled cor
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f97fa97146160e939ade0e785052a2c6
https://doi.org/10.21203/rs.3.rs-1965701/v1
https://doi.org/10.21203/rs.3.rs-1965701/v1
Autor:
Sinan Arslan, Francisco J. Garcia, Minghao Guo, Matthew W. Kellinger, Semyon Kruglyak, Jake A. LeVieux, Adeline H. Mah, Haosen Wang, Junhua Zhao, Chunhong Zhou, Andrew Altomare, John Bailey, Matthew B. Byrne, Chiting Chang, Steve X. Chen, Claudia N. Dennler, Vivian T. Dien, Derek Fuller, Ryan Kelley, Omid Khandan, Michael G. Klein, Michael Kim, Bryan R. Lajoie, Bill Lin, Yu Liu, Tyler Lopez, Peter T. Mains, Andrew D. Price, Samantha R. Robertson, Hermes Taylor-Weiner, Ramreddy Tippana, Austin B. Tomaney, Su Zhang, Mark R. Ambroso, Rosita Bajari, Ava M. Bellizzi, Chris B. Benitez, Daniel R. Berard, Lorenzo Berti, Kelly N. Blease, Angela P. Blum, Andrew M. Boddicker, Leo Bondar, Chris Brown, Chris A. Bui, Juan Calleja-Aguirre, Kevin Cappa, Joshua Chan, Victor W. Chang, Katherine Charov, Xiyi Chen, Rodger M. Constandse, Ryan Costello, Weston Damron, Mariam Dawood, Nicole DeBuono, John D. Dimalanta, Laure Edoli, Keerthana Elango, Nikka Faustino, Chao Feng, Mathhew Ferrari, Keith Frankie, Adam Fries, Anne Galloway, Vlad Gavrila, Gregory J. Gemmen, James Ghadiali, Arash Ghorbani, Logan A. Goddard, Adriana R. Guetter, Garren L. Hendricks, Jendrik Hentschel, Daniel J. Honigfort, Yun-Ting Hsieh, Yu-Hsien Hwang Fu, Scott K. Im, Chaoyi Jin, Shradha Kabu, Daniel E. Kincade, Shawn Levy, Yu Li, Vincent K. Liang, William H. Light, Jonathan B. Lipsher, Tsung-li Liu, Grace Long, Rui Ma, John M. Mailloux, Kyle A. Mandla, Anyssa R. Martinez, Max Mass, Daniel T. McKean, Michael Meron, Celyne S. Moh, Rachel K. Moore, Juan Moreno, Jordan M. Neysmith, Cassandra S. Niman, Jesus M. Nunez, Micah T. Ojeda, Sara Espinosa Ortiz, Jenna Owens, Geoffrey Piland, Daniel J. Proctor, Josua B. Purba, Michael Ray, Daisong Rong, Virginia M. Saade, Sanchari Saha, Gustav Santo Tomas, Nicholas Scheidler, Luqmanal H. Sirajudeen, Samantha Snow, Gudrun Stengel, Ryan Stinson, Michael J. Stone, Keoni J. Sundseth, Eileen Thai, Connor J. Thompson, Marco Tjioe, Christy L. Trejo, Greg Trieger, Diane Ni Truong, Ben Tse, Benjamin Voiles, Henry Vuong, Jennifer C. Wong, Chiung-Ting Wu, Hua Yu, Yingxian Yu, Ming Yu, Xi Zhang, Da Zhao, Genhua Zheng, Molly He, Michael Previte
We present avidity sequencing - a novel sequencing chemistry that separately optimizes the process of stepping along a DNA template and the process of identifying each nucleotide within the template. Nucleotide identification uses multivalent nucleot
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::00c30543f0516bc520d95458ddea143a
https://doi.org/10.1101/2022.11.03.514117
https://doi.org/10.1101/2022.11.03.514117
Autor:
Jessica Watkin, Stacey Gabriel, Norio Niikawa, Michael Boehnke, Lincoln Stein, Karen Kennedy, Mark Leppert, Renzong Qiu, John Stewart, Peter E. Chen, Panos Deloukas, Wei Huang, Deborah A. Nickerson, Fuli Yu, Sarah E. Hunt, Ming Xiao, Francis S. Collins, Fiona Cunningham, Stephen F. Schaffner, Yoshimitsu Fukushima, Jonathan Marchini, Troy Duster, Jane Peterson, Koki Sorimachi, Michael Feolo, Bruce S. Weir, Paul L'Archevêque, Raymond D. Miller, Hongguang Wang, Toyin Aniagwu, Mildred K. Cho, Darryl Macer, Qingrun Zhang, Paul K.H. Tam, Ardavan Kanani, Guy Bellemare, Thomas D. Willis, Mark Shillito, Martin Leboeuf, Lynn F. Zacharia, Pilar N. Ossorio, Charmaine D.M. Royal, Paul Hardenbol, Yusuke Nakamura, Maria Jasperse, Pui-Yan Kwok, Mark S. Guyer, Bin Liu, Leonid Kruglyak, Huanming Yang, Aravinda Chakravarti, John W. Belmont, Ellen Wright Clayton, Jane Rogers, Arnold Oliphant, Jack Spiegel, Houcan Zhang, Stephen T. Sherry, Vincent Ferretti, Julio Licinio, Toshihiro Tanaka, Richard R. Hudson, Mary M.Y. Waye, Lon R. Cardon, Elke Jordan, Gonçalo R. Abecasis, Kazuto Kato, Vivian Ota Wang, Gilean McVean, Lawrence M. Sung, Don Powell, Patricia A. Marshall, Patricia Spallone, Lan Yang Ch'Ang, Alastair Kent, James C. Mullikin, Eric S. Lander, Lucinda Fulton, Michael S. Phillips, Jeffrey Tze Fei Wong, David Valle, Fanny Chagnon, Semyon Kruglyak, Tatsuhiko Tsunoda, Hua Han, John P. Rice, David J. Cutler, Mark J. Daly, Peter Donnelly, Yan Shen, Jean E. McEwen, Andrew P. Morris, Richard Seabrook, Luana Galver, Thomas J. Hudson, Chibuzor Nkwodimmah, Clement Adebamowo, Lisa D. Brooks, Arthur L. Holden, Robert L. Nussbaum, David R. Bentley, Jeffrey C. Long, Nancy L. Saccone, Michael Dunn, Charles N. Rotimi, Sarah S. Murray, Richard A. Gibbs, Simon Myers, George M. Weinstock, Bartha Maria Knoppers, Takashi Fujita, Julie A. Douglas, Georgia M. Dunston, Richard K. Wilson, Sharon F. Terry, Kazuo Todani, Akihiro Sekine, Barbara Skene, Martin Godbout, David Altshuler, Bruce W. Birren, Lynn B. Jorde, Mark S. Chee, Olayemi Matthew, Erica Sodergren, Lap-Chee Tsui, Changqing Zeng, John C. Wallenburg, Missy Dixon, Gudmundur A. Thorisson, Ichiro Matsuda, Andrei Verner, Carl S. Kashuk, Eiji Yoshino, Patricia Taillon-Miller, Morris W. Foster, Satoshi Tanaka, Alexandre Montpetit, Yoichi Tanaka, Denise L. Lind, Eric H. Lai, Eiko Suda, Shenghui Duan
The goal of the International HapMap Project is to determine the common patterns of DNA sequence variation in the human genome and to make this information freely available in the public domain. An international consortium is developing a map of thes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6b68509775c60ce3a8e33fadcb656b72
https://ora.ox.ac.uk/objects/uuid:64fb68cf-6299-4b37-9248-e41084f26570
https://ora.ox.ac.uk/objects/uuid:64fb68cf-6299-4b37-9248-e41084f26570
Autor:
Benjamin L. Moore, Gil McVean, Elliott H. Margulies, Zamin Iqbal, Epameinondas Fritzilas, Michael A. Eberle, Han-Yu Chuang, Aaron L. Halpern, Sean Humphray, David R. Bentley, Peter Krusche, Morten Källberg, Semyon Kruglyak, Mitchell A. Bekritsky
Improvement of variant calling in next-generation sequence data requires a comprehensive, genome-wide catalogue of high-confidence variants called in a set of genomes for use as a benchmark. We generated deep, whole-genome sequence data of seventeen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cec4fd17cd2d9439ba1f450a59596d6e
https://doi.org/10.1101/055541
https://doi.org/10.1101/055541
Autor:
Anthony J. Cox, Semyon Kruglyak, Felix Schlesinger, Richard Shaw, Xiaoyu Chen, Ole Schulz-Trieglaff, Christopher T. Saunders, Bret Barnes
Summary: We describe Manta, a method to discover structural variants and indels from next generation sequencing data. Manta is optimized for rapid clinical analysis, calling structural variants, medium-sized indels and large insertions on standard co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7c384c9e87e2a9699042ff5f0ebec01b
Autor:
Anthony J. Cox, Bret Barnes, Felix Schlesinger, Xiaoyu Chen, Ole Schulz-Trieglaff, Semyon Kruglyak, Morten Källberg, Christopher T. Saunders, Richard Shaw
Publikováno v:
Bioinformatics (Oxford, England). 32(8)
Summary: We describe Manta, a method to discover structural variants and indels from next generation sequencing data. Manta is optimized for rapid germline and somatic analysis, calling structural variants, medium-sized indels and large insertions on
Autor:
E. Chudin, Steffen Oeser, Timothy K. McDaniel, David J.P. Barker, Shawn C. Baker, Semyon Kruglyak
Publikováno v:
Journal of Computational Biology. 13:996-1003
We describe a mathematical model of signal from single-channel direct hybridization microarray platforms. The model establishes a linear relationship between microarray signals and their standard deviations from a minimum set of assumptions. We use t