Non-coding and Coding Transcriptional Profiles Are Significantly Altered in Pediatric Retinoblastoma Tumors.

Autor: Rajasekaran S; Department of Molecular Genetics, The Ohio State University, Columbus, OH, United States.; The Ohio State University Comprehensive Cancer Center, Columbus, OH,, United States.; Center for RNA Biology, The Ohio State University, Columbus, OH, United States., Nagarajha Selvan LD; Department of Nanobiotechnology, Vision Research Foundation, Sankara Nethralaya, Chennai, India., Dotts K; Department of Molecular Genetics, The Ohio State University, Columbus, OH, United States.; The Ohio State University Comprehensive Cancer Center, Columbus, OH,, United States.; Center for RNA Biology, The Ohio State University, Columbus, OH, United States., Kumar R; Department of Nanobiotechnology, Vision Research Foundation, Sankara Nethralaya, Chennai, India., Rishi P; Shri Bhagwan Mahavir Vitreoretinal Services and Ocular Oncology Services, Medical Research Foundation, Sankara Nethralaya, Chennai, India., Khetan V; Shri Bhagwan Mahavir Vitreoretinal Services and Ocular Oncology Services, Medical Research Foundation, Sankara Nethralaya, Chennai, India., Bisht M; Department of Molecular Genetics, The Ohio State University, Columbus, OH, United States.; The Ohio State University Comprehensive Cancer Center, Columbus, OH,, United States.; Center for RNA Biology, The Ohio State University, Columbus, OH, United States., Sivaraman K; MedGenome, Bangalore, India., Krishnakumar S; L&T Department of Ocular Pathology, Vision Research Foundation, Chennai, India., Sahoo D; Department of Pediatrics and Department of Computer Science and Engineering, University of California, San Diego, San Diego, CA, United States., Campbell MJ; Division of Pharmaceutics and Pharmaceutical Chemistry, College of Pharmacy, The Ohio State University, Columbus, OH, United States., Elchuri SV; Department of Nanobiotechnology, Vision Research Foundation, Sankara Nethralaya, Chennai, India., Miles WO; Department of Molecular Genetics, The Ohio State University, Columbus, OH, United States.; The Ohio State University Comprehensive Cancer Center, Columbus, OH,, United States.; Center for RNA Biology, The Ohio State University, Columbus, OH, United States.

Publikováno v: Frontiers in oncology [Front Oncol] 2019 Apr 16; Vol. 9, pp. 221. Date of Electronic Publication: 2019 Apr 16 (Print Publication: 2019).

Characterization of host response to Cryptococcus neoformans through quantitative proteomic analysis of cryptococcal meningitis co-infected with HIV.

Autor: Selvan LD; Institute of Bioinformatics, International Technology Park, Bangalore 560066, India. keshav@ibioinformatics.org., Sreenivasamurthy SK, Kumar S, Yelamanchi SD, Madugundu AK, Anil AK, Renuse S, Nair BG, Gowda H, Mathur PP, Satishchandra P, Shankar SK, Mahadevan A, Keshava Prasad TS

Publikováno v: Molecular bioSystems [Mol Biosyst] 2015 Sep; Vol. 11 (9), pp. 2529-40.

Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.

Autor: Kelkar DS; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ‡Amrita School of Biotechnology, Amrita University, Kollam 690 525, India;, Provost E; §Department of Surgery, Johns Hopkins University, Baltimore, Maryland 21205;, Chaerkady R; ¶McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205;, Muthusamy B; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ‖Centre of Excellence in Bioinformatics, School of Life Sciences, Pondicherry University, Puducherry 605014, India;, Manda SS; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ‖Centre of Excellence in Bioinformatics, School of Life Sciences, Pondicherry University, Puducherry 605014, India; **Departments of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205;, Subbannayya T; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ‡Amrita School of Biotechnology, Amrita University, Kollam 690 525, India;, Selvan LD; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ‡Amrita School of Biotechnology, Amrita University, Kollam 690 525, India;, Wang CH; ¶McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205;, Datta KK; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ‡‡School of Biotechnology, KIIT University, Bhubaneswar, Odisha 751024, India;, Woo S; §§Department of Computer Science, University of California, San Diego, California 92093;, Dwivedi SB; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ‡Amrita School of Biotechnology, Amrita University, Kollam 690 525, India;, Renuse S; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ‡Amrita School of Biotechnology, Amrita University, Kollam 690 525, India;, Getnet D; ¶McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205;, Huang TC; ¶McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205;, Kim MS; ¶McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205; **Departments of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205;, Pinto SM; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ¶McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205; ¶¶Manipal University, Madhav Nagar, Manipal, Karnataka 576104, India;, Mitchell CJ; ¶McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205;, Madugundu AK; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India;, Kumar P; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India;, Sharma J; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ¶¶Manipal University, Madhav Nagar, Manipal, Karnataka 576104, India;, Advani J; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India;, Dey G; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ¶¶Manipal University, Madhav Nagar, Manipal, Karnataka 576104, India;, Balakrishnan L; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ‖‖Department of Biotechnology, Kuvempu University, Shimoga 577 451, India;, Syed N; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; Department of Biochemistry and Molecular Biology, School of Life Sciences, Pondicherry University, Puducherry 605 014, India;, Nanjappa V; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ‡Amrita School of Biotechnology, Amrita University, Kollam 690 525, India;, Subbannayya Y; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India;, Goel R; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India;, Prasad TS; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ‡Amrita School of Biotechnology, Amrita University, Kollam 690 525, India; ‖Centre of Excellence in Bioinformatics, School of Life Sciences, Pondicherry University, Puducherry 605014, India; ¶¶Manipal University, Madhav Nagar, Manipal, Karnataka 576104, India;, Bafna V; §§Department of Computer Science, University of California, San Diego, California 92093;, Sirdeshmukh R; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India;, Gowda H; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India;, Wang C; The Center for Genomics and Division of Microbiology & Molecular Genetics, School of Medicine, Loma Linda University, Loma Linda, California 92350; pandey@jhmi.edu sleach1@jhmi.edu chwang@llu.edu., Leach SD; §Department of Surgery, Johns Hopkins University, Baltimore, Maryland 21205; ¶McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205; pandey@jhmi.edu sleach1@jhmi.edu chwang@llu.edu., Pandey A; From the *Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; ¶McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205; **Departments of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205; Sol Goldman Pancreatic Cancer Research Center, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205; Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 pandey@jhmi.edu sleach1@jhmi.edu chwang@llu.edu.

Publikováno v: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2014 Nov; Vol. 13 (11), pp. 3184-98. Date of Electronic Publication: 2014 Jul 24.

A draft map of the human proteome.

Autor: Kim MS; 1] McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA [2] Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA., Pinto SM; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Getnet D; 1] McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA [2] Adrienne Helis Malvin Medical Research Foundation, New Orleans, Louisiana 70130, USA., Nirujogi RS; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Manda SS; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Chaerkady R; 1] McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA [2] Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA., Madugundu AK; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Kelkar DS; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Isserlin R; The Donnelly Centre, University of Toronto, Toronto, Ontario M5S 3E1, Canada., Jain S; The Donnelly Centre, University of Toronto, Toronto, Ontario M5S 3E1, Canada., Thomas JK; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Muthusamy B; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Leal-Rojas P; 1] McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA [2] Department of Pathology, Universidad de La Frontera, Center of Genetic and Immunological Studies-Scientific and Technological Bioresource Nucleus, Temuco 4811230, Chile., Kumar P; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Sahasrabuddhe NA; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Balakrishnan L; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Advani J; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., George B; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Renuse S; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Selvan LD; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Patil AH; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Nanjappa V; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Radhakrishnan A; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Prasad S; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA., Subbannayya T; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Raju R; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Kumar M; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Sreenivasamurthy SK; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Marimuthu A; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Sathe GJ; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Chavan S; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Datta KK; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Subbannayya Y; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Sahu A; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Yelamanchi SD; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Jayaram S; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Rajagopalan P; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Sharma J; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Murthy KR; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Syed N; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Goel R; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Khan AA; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Ahmad S; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Dey G; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Mudgal K; School of Medicine, Imperial College London, South Kensington Campus, London SW7 2AZ, UK., Chatterjee A; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Huang TC; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA., Zhong J; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA., Wu X; 1] McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA [2] Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA., Shaw PG; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA., Freed D; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA., Zahari MS; Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA., Mukherjee KK; Department of Neurosurgery, Postgraduate Institute of Medical Education & Research, Chandigarh 160012, India., Shankar S; Department of Internal Medicine Armed Forces Medical College, Pune 411040, India., Mahadevan A; 1] Department of Neuropathology, National Institute of Mental Health and Neurosciences, Bangalore 560029, India [2] Human Brain Tissue Repository, Neurobiology Research Centre, National Institute of Mental Health and Neurosciences, Bangalore 560029, India., Lam H; Department of Chemical and Biomolecular Engineering and Division of Biomedical Engineering, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong., Mitchell CJ; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA., Shankar SK; 1] Department of Neuropathology, National Institute of Mental Health and Neurosciences, Bangalore 560029, India [2] Human Brain Tissue Repository, Neurobiology Research Centre, National Institute of Mental Health and Neurosciences, Bangalore 560029, India., Satishchandra P; Department of Neurology, National Institute of Mental Health and Neurosciences, Bangalore 560029, India., Schroeder JT; Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21224, USA., Sirdeshmukh R; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Maitra A; 1] The Sol Goldman Pancreatic Cancer Research Center, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA [2] Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA., Leach SD; 1] McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA [2] Department of Surgery, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA., Drake CG; 1] Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA [2] Departments of Immunology and Urology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA., Halushka MK; The Sol Goldman Pancreatic Cancer Research Center, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA., Prasad TS; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Hruban RH; 1] The Sol Goldman Pancreatic Cancer Research Center, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA [2] Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA., Kerr CL; 1] Department of Obstetrics and Gynecology, Johns Hopkins University School of Medicine Baltimore, Maryland 21205, USA [2] Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA., Bader GD; The Donnelly Centre, University of Toronto, Toronto, Ontario M5S 3E1, Canada., Iacobuzio-Donahue CA; 1] The Sol Goldman Pancreatic Cancer Research Center, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA [2] Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA [3] Department of Surgery, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA., Gowda H; Institute of Bioinformatics, International Tech Park, Bangalore 560066, India., Pandey A; 1] McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA [2] Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA [3] Institute of Bioinformatics, International Tech Park, Bangalore 560066, India [4] Adrienne Helis Malvin Medical Research Foundation, New Orleans, Louisiana 70130, USA [5] The Sol Goldman Pancreatic Cancer Research Center, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA [6] Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA [7] Diana Helis Henry Medical Research Foundation, New Orleans, Louisiana 70130, USA.

Publikováno v: Nature [Nature] 2014 May 29; Vol. 509 (7502), pp. 575-81.

Phosphoproteome of Cryptococcus neoformans.

Autor: Selvan LD; Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; Amrita School of Biotechnology, Amrita University, Kollam 690 525, India., Renuse S; Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; Amrita School of Biotechnology, Amrita University, Kollam 690 525, India., Kaviyil JE; Department of Neuromicrobiology, National Institute of Mental Health and Neurosciences, Bangalore 560 029, India., Sharma J; Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; Manipal University, Madhav Nagar, Manipal, Karnataka 576104, India., Pinto SM; Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; Manipal University, Madhav Nagar, Manipal, Karnataka 576104, India., Yelamanchi SD; Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India., Puttamallesh VN; Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India., Ravikumar R; Department of Neuromicrobiology, National Institute of Mental Health and Neurosciences, Bangalore 560 029, India., Pandey A; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. Electronic address: pandey@jhmi.edu., Prasad TS; Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India; Amrita School of Biotechnology, Amrita University, Kollam 690 525, India; Manipal University, Madhav Nagar, Manipal, Karnataka 576104, India. Electronic address: keshav@ibioinformatics.org., Harsha HC; Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India. Electronic address: harsha@ibioinformatics.org.

Publikováno v: Journal of proteomics [J Proteomics] 2014 Jan 31; Vol. 97, pp. 287-95. Date of Electronic Publication: 2013 Jul 11.