Systematic evaluation of spliced alignment programs for RNA-seq data

Autor: Engström, Pg, Steijger, T, Sipos, B, Grant, Gr, Kahles, A, Alioto, T, Behr, J, Bertone, P, Bohnert, R, Campagna, Davide, Davis, Ca, Dobin, A, Gingeras, Tr, Goldman, N, Guigó, R, Harrow, J, Hubbard, Tj, Jean, G, Kosarev, P, Li, S, Liu, J, Mason, Ce, Molodtsov, V, Ning, Z, Ponstingl, H, Prins, Jf, Rätsch, G, Ribeca, P, Seledtsov, I, Solovyev, V, Valle, Giorgio, Vitulo, Nicola, Wang, K, Wu, Td, Zeller, G, Rgasp, Consortium

Publikováno v: Nature methods
Nature Methods
Nature Methods, Nature Publishing Group, 2013, epub ahead of print. ⟨10.1038/nmeth.2722⟩
Recercat. Dipósit de la Recerca de Catalunya
instname

LINA-COMBI; International audience; : High-throughput RNA sequencing is an increasingly accessible method for studying gene structure and activity on a genome-wide scale. A critical step in RNA-seq data analysis is the alignment of partial transcript

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6385fd1559cfdc01d937b50d88596646
http://europepmc.org/articles/PMC4018468

Analysis of canonical and non-canonical splice sites in mammalian genomes.

Autor: Burset, M., Seledtsov, I. A., Solovyev, V. V.

Publikováno v: Nucleic Acids Research; Nov2000, Vol. 28 Issue 21, p4364-4375, 12p

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[Multiple alignment of biopolymer sequences, based on the search for statistically significant common segments].

Autor: Seledtsov IA, Vul'f IuI, Makarova KS

Publikováno v: Molekuliarnaia biologiia [Mol Biol (Mosk)] 1995 Sep-Oct; Vol. 29 (5), pp. 1023-39.