Zobrazeno 1 - 10
of 34
pro vyhledávání: '"Sedghifar A"'
Autor:
Yong Wang, Robert Burton, Cecily Vaughn, Miao Zhang, Brooke Rhead, Heather Harris, Spencer C Knight, Shannon R McCurdy, Marie V Coignet, Danny S Park, Genevieve H L Roberts, Nathan D Berkowitz, David Turissini, Karen Delgado, Milos Pavlovic, Asher K Haug Baltzell, Harendra Guturu, Kristin A Rand, Ahna R Girshick, Eurie L Hong, Catherine A Ball, Yambazi Banda, Ke Bi, Marjan Champine, Ross Curtis, Abby Drokhlyansky, Ashley Elrick, Cat Foo, Michael Gaddis, Jialiang Gu, Shannon Hateley, Shea King, Christine Maldonado, Evan McCartney-Melstad, Alexandra McFarland, Patty Miller, Luong Nguyen, Keith Noto, Jingwen Pei, Jenna Petersen, Scott Pew, Chodon Sass, Josh Schraiber, Alisa Sedghifar, Andrey Smelter, Sarah South, Barry Starr
Publikováno v:
BMJ Open, Vol 12, Iss 10 (2022)
Objectives The enormous toll of the COVID-19 pandemic has heightened the urgency of collecting and analysing population-scale datasets in real time to monitor and better understand the evolving pandemic. The objectives of this study were to examine t
Externí odkaz:
https://doaj.org/article/3d91f05ab0d54f8ea55c2becf75f8e4a
Autor:
Yong Wang, Shiya Song, Joshua G. Schraiber, Alisa Sedghifar, Jake K. Byrnes, David A. Turissini, Eurie L. Hong, Catherine A. Ball, Keith Noto
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-14 (2021)
Abstract Background We present ARCHes, a fast and accurate haplotype-based approach for inferring an individual’s ancestry composition. Our approach works by modeling haplotype diversity from a large, admixed cohort of hundreds of thousands, then a
Externí odkaz:
https://doaj.org/article/608ec1efd6ab4873aab989a6f94f12e2
Autor:
Marie V. Coignet, Eurie L. Hong, Sarah South, Miao Zhang, Harendra Guturu, Pei Jingwen, Jialiang Gu, Brooke Rhead, Michael Gaddis, Cecily Vaughn, Luong Ruiz, Nathan Berkowitz, Cat Foo, Ashley Elrick, Christine Maldonado, Ahna R. Girshick, Heather H. Harris, Ke Bi, Marjan Champine, Evan McCartney-Melstad, Spencer C. Knight, Keith Noto, Barry Starr, Milos Pavlovic, David A. Turrisini, Robert Burton, Kristin A. Rand, Ross E. Curtis, Shea King, Andrey Smelter, Karen Delgado, Yambazi Banda, Asher K. Haug Baltzell, Alisa Sedghifar, Raghavendran Partha, Yong Wang, Abby Drokhlyansky, Genevieve H.L. Roberts, Chodon Sass, Jenna Petersen, Patty Miller, Danny S. Park, Catherine A. Ball, Shannon R. McCurdy
INTRODUCTION PARAGRAPHMultiple large COVID-19 genome-wide association studies (GWAS) have identified reproducible genetic associations indicating that some infection susceptibility and severity risk is heritable.1-5 Most of these studies ascertained
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a680e1c5a57d19fa29d6b35999852a32
https://doi.org/10.1101/2021.01.24.21250324
https://doi.org/10.1101/2021.01.24.21250324
Autor:
Wang, Yong, Song, Shiya, Schraiber, Joshua G., Sedghifar, Alisa, Byrnes, Jake K., Turissini, David A., Hong, Eurie L., Ball, Catherine A., Noto, Keith
Additional file 1: Supplementary Materials. Contains Figures S1–S5, Tables S1 and S2, and Appendix S1 which contains implementation details, formulas, and pseudocode.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8c1f293fcf4e599d75aaa13ba31d2b26
Akademický článek
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Autor:
Jake K. Byrnes, Alisa Sedghifar, Catherine A. Ball, Eurie L. Hong, Joshua G. Schraiber, Shiya Song, Keith Noto, David A. Turissini, Yong Wang
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-14 (2021)
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-14 (2021)
We present ARCHes, a fast and accurate haplotype-based approach for inferring an individual’s ancestry composition. Our approach works by modeling haplotype diversity from a large, admixed cohort of hundreds of thousands, then annotating those mode
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bafdc810d973bc5c3a88aac5dbe1ab98
https://doi.org/10.1101/2020.09.23.310698
https://doi.org/10.1101/2020.09.23.310698
Autor:
Cooper, Brandon S., Sedghifar, Alisa, Nash, W. Thurston, Comeault, Aaron A., Matute, Daniel R.
Publikováno v:
In Current Biology 24 September 2018 28(18):2940-2947
Publikováno v:
Genetics, vol 202, iss 3
Geographic patterns of genetic differentiation have long been used to understand population history and to learn about the biological mechanisms of adaptation. Here we present an examination of genomic patterns of differentiation between northern and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b987476eb32f508766484735fe780de8
https://doi.org/10.1534/genetics.115.185496
https://doi.org/10.1534/genetics.115.185496
Geographical areas where two species come into contact and hybridize serve as natural laboratories for assessing mechanisms that limit gene flow between species. The ranges of about half of all closely relatedDrosophilaspecies overlap, and the genome
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d07af7fe595ad215876392252d3c8040
Publikováno v:
Molecular ecology. 25(11)
Hybrid zones formed between recently diverged populations offer an opportunity to study the mechanisms underlying reproductive isolation and the process of speciation. Here, we use a combination of analytical theory and explicit forward simulations t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cdb48cc6db476efb7978920246741d97
https://pubmed.ncbi.nlm.nih.gov/27148805
https://pubmed.ncbi.nlm.nih.gov/27148805