Extracting Information in a Low-resource Setting: Case Study on Bioinformatics Workflows

Autor: Sebe, Clémence, Cohen-Boulakia, Sarah, Ferret, Olivier, Névéol, Aurélie

Bioinformatics workflows are essential for complex biological data analyses and are often described in scientific articles with source code in public repositories. Extracting detailed workflow information from articles can improve accessibility and r

Externí odkaz: http://arxiv.org/abs/2411.19295

Extraction d'informations sur les workflows scientifiques à partir de la littérature

Autor: Sebe, Clémence, Névéol, Aurélie, Cohen-Boulakia, Sarah, Gaignard, Alban

Publikováno v: 23ème conférence francophone sur l'Extraction et la Gestion des Connaissances (EGC)
23ème conférence francophone sur l'Extraction et la Gestion des Connaissances (EGC), Jan 2023, Lyon, France. pp.313-320

International audience; Scientific workflows provide bioinformaticians a mean to represent, exchange and ensure the reproducibility of their analysis pipelines. Workflows are described in literature (text) and/or stored in workflow repositories (code

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______165::50184ad5d1ca851c70a59b3844bc5ee3
https://hal.science/hal-03991363