Zobrazeno 1 - 10
of 34
pro vyhledávání: '"Sebastien Gehant"'
Autor:
Edouard de Castro, Chantal Hulo, Delphine Baratin, Béatrice A. Cuche, Sebastien Gehant, Elisabeth Coudert, Catherine Rivoire, Ivo Pedruzzi, Nicole Redaschi, Alan Bridge, Patrick Masson, Ioannis Xenarios, Jerven Bolleman, Andrea H. Auchincloss
Publikováno v:
GigaScience
BackgroundGenome and proteome annotation pipelines are generally custom built and not easily reusable by other groups. This leads to duplication of effort, increased costs, and suboptimal annotation quality. One way to address these issues is to enco
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::062c6c5b522d83eaa721e99f0199938b
https://doi.org/10.1093/gigascience/giaa003
https://doi.org/10.1093/gigascience/giaa003
Autor:
Fábio Madeira, Emmanuel Boutet, Ursula Hinz, Teresa Batista Neto, Parit Bansal, Manuela Pruess, Kristian B. Axelsen, Arnaud Kerhornou, Cecilia N. Arighi, Lai-Su L. Yeh, Shadab Ahmad, John S. Garavelli, Cathy H. Wu, Florence Jungo, Alan Bridge, Leonardo Gonzales, Sandra Orchard, Patrick Masson, Douglas Teodoro, Maria Jesus Martin, Anne Estreicher, Kamal Chikh Echioukh, Hongzhan Huang, Patrick Ruch, Christian J. A. Sigrist, C. R. Vinayaka, Yvonne Lussi, Anne Morgat, Yongxing Chen, Austra Cukura, Emanuele Alpi, Ramona Britto, Alexandr Ignatchenko, Sylvain Poux, Rizwan Ishtiaq, Lionel Breuza, Jun Fan, Edouard de Castro, Petteri Jokinen, Nicole Redaschi, Darren A. Natale, Daniel Rice, Giuseppe Insana, George Georghiou, Nevila Hyka-Nouspikel, Karen E. Ross, Katie Moulang, Vicente Lara, Arnaud Gos, Michael Tognolli, Alok Mishra, Ivo Pedruzzi, Nidhi Tyagi, Leyla Jael Garcia Castro, Edward Turner, Cristina Casals-Casas, Tunca Doğan, Nadine Gruaz-Gumowski, Chantal Hulo, Maria Livia Famiglietti, Andrew Nightingale, Paul Denny, Lucila Aimo, Rossana Zaru, Vishal Joshi, Alistair MacDougall, Andre Stutz, Penelope Garmiri, Carla Susana Oliveira, Hermann Zellner, Marie-Claude Blatter, Emily H Bowler-Barnett, Philippe Le Mercier, Abdulrahman Hussein, Catherine Rivoire, Tony Sawford, Milagros Rodriguez Lopez, Salvo Paesano, Vladimir Volynkin, Manuela Menchi, Hema Bye-A-Jee, Monica Pozzato, Kati Laiho, Delphine Baratin, Qinghua Wang, Leslie Arminski, Preethi Vasudev, Sangya Pundir, Jian Zhang, Emma Hatton-Ellis, Kate Warner, Lucille Pourcel, Elisabeth Gasteiger, Marc Feuermann, Thierry Lombardot, Jerven Bolleman, Mahdi Mahmoudy, Shyamala Sundaram, Alex Bateman, Xavier Watkins, Rahat Agivetova, Guoying Qi, Peter B. McGarvey, Xavier D. Martin, Chuming Chen, Jie Luo, Ray Coetzee, K Sonesson, Alan Wilter Sousa da Silva, ThankGod Ebenezer, Elena Speretta, Rodrigo Lopez, Elisabeth Coudert, Aurelien Luciani, Vivienne Baillie Gerritsen, Yuqi Wang, M Doche, Michele Magrane, Antonia Lock, Dolnide Dornevil, Sandrine Pilbout, Borisas Bursteinas, Andrea H. Auchincloss, Béatrice A. Cuche, Dushyanth Jyothi, Rabie Saidi, Joseph Sampson, Laure Verbregue, Sebastien Gehant, Guillaume Keller, Shriya Raj, Damien Lieberherr, Ghislaine Argoud-Puy
Publikováno v:
Nucleic acids symposium series, 49(D1):D480-D489
Nucleic Acids Research
Nucleic acids research, Vol. 49, No D1 (2021) pp. D480-D489
Nucleic Acids Research
Nucleic acids research, Vol. 49, No D1 (2021) pp. D480-D489
The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this article, we describe significant updates that we have made over
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cbc39a701c00fab2f8e9cd325fc3977e
https://repository.publisso.de/resource/frl:6425514
https://repository.publisso.de/resource/frl:6425514
Autor:
Sylvain Poux, Delphine Baratin, Ioannis Xenarios, Teresa Batista Neto, Elisabeth Gasteiger, Sebastien Gehant, Nicole Redaschi, Anne Morgat, Thierry Lombardot, Jerven Bolleman, Edouard de Castro, Parit Bansal, Monica Pozzato, Elisabeth Coudert, Kristian B. Axelsen, Alan Bridge
Publikováno v:
Bioinformatics
MotivationTo provide high quality computationally tractable enzyme annotation in UniProtKB using Rhea, a comprehensive expert-curated knowledgebase of biochemical reactions which describes reaction participants using the ontology ChEBI (Chemical Enti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::094df19a76493513f1d0258b3b046420
https://doi.org/10.1093/bioinformatics/btz817
https://doi.org/10.1093/bioinformatics/btz817
Autor:
Borisas Bursteinas, L-S Yeh, Klemens Pichler, Guillaume Keller, C Casal-Casas, Gerritsen, A Da Silva, Prudence Mutowo, Xavier D. Martin, Peter B. McGarvey, Volynkin, J Lew, K Sonesson, M. C. Blatter, L Pureza, Rodrigo Lopez, Anne Estreicher, Alex Bateman, Ramona Britto, A-L Veuthey, Penelope Garmiri, Patrick Masson, Baris E. Suzek, Cathy H. Wu, Paul Gane, Maria Jesus Martin, Shyamala Sundaram, Yasmin Alam-Faruque, Ioannis Xenarios, Alan Bridge, WM Chan, Guoying Qi, L Famiglietti, Christian J. A. Sigrist, Nadine Gruaz-Gumowski, Chantal Hulo, Hermann Zellner, Matthew Corbett, Monica Pozzato, Thierry Lombardot, S Staehli, Jerven Bolleman, Sylvain Poux, Séverine Duvaud, Tony Sawford, Chuming Chen, Xavier Watkins, Yuqi Wang, Elisabeth Gasteiger, Kati Laiho, Qinghua Wang, M Bingley, Lydie Bougueleret, Kristian B. Axelsen, Yongxing Chen, Salvo Paesano, Andrew Nightingale, Nicole Redaschi, Emma Hatton-Ellis, John S. Garavelli, Delphine Baratin, Darren A. Natale, Gayatri Chavali, E de Castro, Leslie Arminski, Damien Lieberherr, Elena Cibrian-Uhalte, Catherine Rivoire, Bernd Roechert, Yerramalla, Hongzhan Huang, Alistair MacDougall, Edd Turner, Maria Victoria Schneider, Aleksandra Shypitsyna, Jie Zhang, Michele Magrane, Dolnide Dornevil, Lara, M Donnelly, F. Fazzini, Andrea H. Auchincloss, Emanuele Alpi, Benoit Bely, Brigitte Boeckmann, Rolf Apweiler, Rachael P. Huntley, Lionel Breuza, Sangya Pundir, Lorenzo Cerutti, Tunca Doğan, EB Casanova, P van Rensburg, Rabie Saidi, Jie Luo, Mickael Goujon, Laure Verbregue, Tony Wardell, W Liu, Andre Stutz, P Lemercier, Hamish McWilliam, Ivo Pedruzzi, P-A Binz, Sebastien Gehant, Béatrice A. Cuche, Carlos Bonilla, Duncan Legge, C. R. Vinayaka, Anne Morgat, Diego Poggioli, J Arganiska, Teresa Batista Neto, Emmanuel Boutet, Florence Jungo, Ursula Hinz, Parit Bansal, Sandra Orchard, Ricardo Antunes, Manuela Pruess, M Feuermann, S. Rosanoff, Claire O'Donovan, Cecilia N. Arighi, J. James, M Doche, Elisabeth Coudert, M De Giorgi, Reija Hieta, Sandrine Pilbout, Arnaud Gos, Michael Tognolli, Leyla Jael Garcia Castro, Lucila Aimo
Publikováno v:
Nucleic Acids Research
The mission of the Universal Protein Resource (UniProt) (http://www.uniprot.org) is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequences and functional annotation. It integrates, i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dacc18afba0dcb8db8d93542e3ba0bff
http://europepmc.org/articles/PMC3965022
http://europepmc.org/articles/PMC3965022
Autor:
Ursula Hinz, Prudence Mutowo, Laure Verbregue, Weizhong Li, Nadine Gruaz-Gumowski, Chantal Hulo, Hermann Zellner, Shyamala Sundaram, P Lemercier, Guoying Qi, Parit Bansal, Tony Sawford, Sebastien Gehant, Delphine Baratin, Francesco Fazzini, Monica Pozzato, Séverine Duvaud, Lai-Su L. Yeh, Nicole Redaschi, Emma Hatton-Ellis, Darren A. Natale, Damien Lieberherr, Luis Figueira, Bernd Roechert, Borisas Bursteinas, Gayatri Chavali, Brigitte Boeckmann, Cristina Casal-Casas, Baris E. Suzek, Cathy H. Wu, Paul Gane, Ghislaine Argoud-Puy, Klemens Pichler, Rachael P. Huntley, Sangya Pundir, Alan Bridge, Edouard de Castro, Benoit Bely, Kristian B. Axelsen, Emmanuel Boutet, Andre Stutz, Penelope Garmiri, Christian J. A. Sigrist, John S. Garavelli, Rolf Apweiler, Peter B. McGarvey, Patrick Masson, Maria Jesus Martin, K Sonesson, Xavier Watkins, Ioannis Xenarios, Vladimir Volynkin, Hamish McWilliam, Mark Bingley, Guillaume Keller, Hongzhan Huang, Rabie Saidi, Sylvain Poux, Tunca Doğan, Yuqi Wang, Diego Poggioli, Rodrigo Lopez, Alistair MacDougall, Kati Laiho, Qinghua Wang, W Liu, Carlos Bonilla, Duncan Legge, C. R. Vinayaka, Anne Morgat, Thierry Lombardot, Jerven Bolleman, Nevila Nouspikel, Aleksandra Shypitsyna, Emanuele Alpi, Yongxing Chen, Anne Lise Veuthey, Andrew Nightingale, Béatrice A. Cuche, Alex Bateman, Ramona Britto, Alan Wilter Sousa da Silva, Jie Luo, Lionel Breuza, Marie Claude Blatter, Elena Cibrian-Uhalte, Michel Schneider, Chuming Chen, Michele Magrane, L Famiglietti, Meher Shruti Yerramalla, Lydie Bougueleret, Vivienne Baillie Gerritsen, Anne Estreicher, Dolnide Dornevil, Catherine Rivoire, Jian Zhang, S Staehli, Andrew Peter Cowley, Tony Wardell, Ivo Pedruzzi, Andrea H. Auchincloss, Salvo Paesano, Elisabeth Gasteiger, Luis Pureza, Marc Feuermann, Leslie Arminski, Xavier D. Martin, Teresa Batista Neto, Steven Rosanoff, Florence Jungo, Sandra Orchard, Claire O'Donovan, Elisabeth Coudert, Ricardo Antunes, Sandrine Pilbout, Vicente Lara, Arnaud Gos, Reija Hieta, Manuela Pruess, Joanna Arganiska, Edward Turner, Maurizio De Giorgi, M Doche, Cecilia N. Arighi, Michael Tognolli, Leyla Jael Garcia Castro, Lucila Aimo
Publikováno v:
Nucleic Acids Research
UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::429cad485e24854c12fb7ce51fdc3b2a
https://pubmed.ncbi.nlm.nih.gov/25348405
https://pubmed.ncbi.nlm.nih.gov/25348405
Autor:
Ioannis Xenarios, Jerven Bolleman, Sebastien Gehant, Alan Bridge, Anne Estreicher, Lydie Bougueleret, Nicole Redaschi, Arnaud Gos, Lionel Breuza, Sylvain Poux, Maria Livia Famiglietti
Publikováno v:
Human Mutation
Human Mutation, vol. 35, no. 8, pp. 927-935
Human Mutation, vol. 35, no. 8, pp. 927-935
During the last few years, next-generation sequencing (NGS) technologies have accelerated the detection of genetic variants resulting in the rapid discovery of new disease-associated genes. However, the wealth of variation data made available by NGS
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::878c3b21358af19ee4a3f533f01e736e
https://pubmed.ncbi.nlm.nih.gov/24848695
https://pubmed.ncbi.nlm.nih.gov/24848695
Autor:
Vicente Lara, Arnaud Gos, Nikolas Pontikos, L. Bollondi, L Famiglietti, Barker Wc, Chuming Chen, Michael Tognolli, Patrick Masson, Salvo Paesano, Tony Sawford, Sandrine Pilbout, Jerven Bolleman, Jian Zhang, S Staehli, Elisabeth Gasteiger, David Binns, Ursula Hinz, Nadine Gruaz-Gumowski, Chantal Hulo, Maria Jesus Martin, M. Corbett, Veuthey Al, Paul Browne, Guillaume Keller, S. Jimenez, Roberts Nv, Brigitte Boeckmann, Natale Da, Suzek Be, Edward Turner, T. Kappler, Steven Rosanoff, Leslie Arminski, Florence Jungo, M Donnelly, P. Dubey, Ruth Y. Eberhardt, Lydie Bougueleret, Vivienne Baillie Gerritsen, Maria Victoria Schneider, Lionel Breuza, Isabelle Cusin, Delphine Baratin, E. Dimmer, Rachael P. Huntley, Julius O.B. Jacobsen, Arighi Cn, Quintaje Sb, Alan Bridge, Nicole Redaschi, Shyamala Sundaram, Peter B. McGarvey, Rebecca E. Foulger, Duncan Legge, Andre Stutz, Monica Pozzato, Raja Mazumder, Anne Morgat, M Doche, K Sonesson, Anne Estreicher, Blatter Mc, Manuela Pruess, Serenella Ferro, Séverine Duvaud, F. Fazzini, Rolf Apweiler, Natarajan Tg, E. Stanley, M Feuermann, Claire O'Donovan, J. James, Ivo Pedruzzi, Castro Lg, Wu Ch, M Bingley, W Liu, He Huang, Bernd Roechert, Laure Verbregue, Elisabeth Coudert, Ioannis Xenarios, M. Moinat, Sandra Orchard, P Lemercier, Damien Lieberherr, Ricardo Antunes, Ghislaine Argoud-Puy, Sebastien Gehant, Qiang Wang, Klemens Pichler, S. Patient, Nicolas Hulo, Diego Poggioli, J. Nchoutmboube, Emmanuel Boutet, H. Sehra, Chan Wm, Yasmin Alam-Faruque, M. Kleen, Van Rensburg P, Kati Laiho, Kristian B. Axelsen, John S. Garavelli, Christian J. A. Sigrist, Amos Marc Bairoch, Yongxing Chen, A. Fedotov, Yeh Ls, Sylvain Poux, Lynette Bower, Quan Lin, Daniel Barrell, Benoit Bely, U. Ugochukwu, Xavier D. Martin, Catherine Rivoire, E. Decastro, Jie Luo, Alain Gateau, Michele Magrane, Dolnide Dornevil, Vinayaka Cr, Andrea H. Auchincloss, Yuqi Wang
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, 2011, 39 (Database issue), pp.D214-9. ⟨10.1093/nar/gkq1020⟩
Nucleic Acids Research, Oxford University Press, 2011, 39 (Database issue), pp.D214-9. ⟨10.1093/nar/gkq1020⟩
Nucleic Acids Research; Vol 39
Nucleic Acids Research, vol. 39, no. Database issue, pp. D214-D219
Nucleic Acids Research, 2011, 39 (Database issue), pp.D214-9. ⟨10.1093/nar/gkq1020⟩
Nucleic Acids Research, Oxford University Press, 2011, 39 (Database issue), pp.D214-9. ⟨10.1093/nar/gkq1020⟩
Nucleic Acids Research; Vol 39
Nucleic Acids Research, vol. 39, no. Database issue, pp. D214-D219
International audience; The primary mission of Universal Protein Resource (UniProt) is to support biological research by maintaining a stable, comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with exten
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2bb13db339c56730c1ada1950020ba13
https://inria.hal.science/hal-00746843
https://inria.hal.science/hal-00746843
Autor:
Helen Parkinson, Camille Laibe, Mark Davies, Ewan Birney, Nicole Redaschi, Maria Jesus Martin, Andrew M. Jenkinson, James Malone, Sebastien Gehant, Jerven Bolleman, Nicolas Le Novère, Simon Jupp, Anna Gaulton, Sarala M. Wimalaratne, Marco Brandizi, Leyla Garcia
Publikováno v:
Bioinformatics
Motivation: Resource description framework (RDF) is an emerging technology for describing, publishing and linking life science data. As a major provider of bioinformatics data and services, the European Bioinformatics Institute (EBI) is committed to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::edcc1256f9e63eed4fdd581ef0e85e5b
http://europepmc.org/articles/PMC3998127
http://europepmc.org/articles/PMC3998127
Autor:
Insana, Giuseppe1, Ignatchenko, Alex1, Martin, Maria1, Bateman, Alex1 agb@ebi.ac.uk, Consortium, UniProt
Publikováno v:
Bioinformatics Advances. 2023, Vol. 3 Issue 1, p1-4. 4p.
Autor:
Wang, Yuqi1,2 (AUTHOR), Wang, Qinghua1,2 (AUTHOR), Huang, Hongzhan1,2 (AUTHOR), Huang, Wei3 (AUTHOR), Chen, Yongxing1,2 (AUTHOR), McGarvey, Peter B.4 (AUTHOR), Wu, Cathy H.1,2,4 (AUTHOR), Arighi, Cecilia N.1,2 (AUTHOR) arighi@udel.edu
Publikováno v:
PLoS Biology. 12/6/2021, Vol. 19 Issue 12, p1-6. 6p. 1 Diagram.