Zobrazeno 1 - 10
of 27
pro vyhledávání: '"Sebastian Theobald"'
Autor:
Sebastian Theobald, Tammi C. Vesth, Elena Geib, Jane L. Nybo, Jens C. Frisvad, Thomas O. Larsen, Alan Kuo, Kurt LaButti, Ellen K. Lyhne, Inge Kjærbølling, Line Ledsgaard, Kerrie Barry, Alicia Clum, Cindy Chen, Matt Nolan, Laura Sandor, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Asaf Salamov, Robert Riley, Ad Wiebenga, Astrid Müller, Roland S. Kun, Ana Carolina dos Santos Gomes, Bernard Henrissat, Jon K. Magnuson, Blake A. Simmons, Miia R. Mäkelä, Uffe H. Mortensen, Igor V. Grigoriev, Matthias Brock, Scott E. Baker, Ronald P. de Vries, Mikael R. Andersen
Publikováno v:
Journal of Fungi, Vol 10, Iss 7, p 507 (2024)
Aspergillus terreus has attracted interest due to its application in industrial biotechnology, particularly for the production of itaconic acid and bioactive secondary metabolites. As related species also seem to possess a prosperous secondary metabo
Externí odkaz:
https://doaj.org/article/965e40567a17419182833c65476fe7d3
Autor:
Inge Kjærbølling, Tammi Vesth, Jens C. Frisvad, Jane L. Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen K. Lyhne, Martin E. Kogle, Ad Wiebenga, Roland S. Kun, Ronnie J. M. Lubbers, Miia R. Mäkelä, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt LaButti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake A. Simmons, Jon K. Magnuson, Bernard Henrissat, Uffe H. Mortensen, Thomas O. Larsen, Ronald P. de Vries, Igor V. Grigoriev, Masayuki Machida, Scott E. Baker, Mikael R. Andersen
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Aspergillus fungi classified within the section Flavi include harmful and beneficial species. Here, Kjærbølling et al. analyse the genomes of 23 Flavi species, showing high genetic diversity and potential for synthesis of over 13,700 CAZymes and 16
Externí odkaz:
https://doaj.org/article/bdaa7f283fe143698df14e2b5d6b20fc
Publikováno v:
BMC Genomics, Vol 20, Iss 1, Pp 1-12 (2019)
Abstract Background Filamentous fungi produce a vast amount of bioactive secondary metabolites (SMs) synthesized by e.g. hybrid polyketide synthase-nonribosomal peptide synthetase enzymes (PKS-NRPS; NRPS-PKS). While their domain structure suggests a
Externí odkaz:
https://doaj.org/article/526b20ad0c4f4b0e9e87b290da0587e8
Autor:
Anna Lipzen, Martin Engelhard Kogle, Kerrie Barry, Ellen Kirstine Lyhne, Atsushi Sato, Mikael Rørdam Andersen, Uffe Hasbro Mortensen, Kurt LaButti, Igor V. Grigoriev, Inge Kjærbølling, Roland S. Kun, Tammi Camilla Vesth, Ronnie J. M. Lubbers, Blake A. Simmons, Bernard Henrissat, Alicia Clum, Masayuki Machida, Miia R. Mäkelä, Asaf Salamov, Scott E. Baker, Robert Riley, Guifen He, Thomas Ostenfeld Larsen, Sebastian Theobald, Ronald P. de Vries, Jasmyn Pangilinan, Sajeet Haridas, Jane L. Nybo, Ad Wiebenga, Chris Daum, Sara Kildgaard, Stephen J. Mondo, Thomas Isbrandt Petersen, Jens Christian Frisvad, Jon K. Magnuson, Alan Kuo, Mansi Chovatia
Publikováno v:
Nature Communications, 11(1). Nature Publishing Group
Nature Communications
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-019-14051-y⟩
Nature communications, vol 11, iss 1
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Kjærbølling, I, Vesth, T C, Frisvad, J C, Nybo, J L, Theobald, S, Kildgaard, S, Petersen, T I, Kuo, A, Sato, A, Lyhne, E K, Kogle, M E, Wiebenga, A, Kun, R S, Lubbers, R J M, Mäkelä, M R, Barry, K, Chovatia, M, Clum, A, Daum, C, Haridas, S, He, G, LaButti, K, Lipzen, A, Mondo, S, Pangilinan, J, Riley, R, Salamov, A, Simmons, B A, Magnuson, J K, Henrissat, B, Mortensen, U H, Larsen, T O, de Vries, R P, Grigoriev, I V, Machida, M, Baker, S E & Andersen, M R 2020, ' A comparative genomics study of 23 Aspergillus species from section Flavi ', Nature Communications, vol. 11, no. 1, 1106 . https://doi.org/10.1038/s41467-019-14051-y
Nature Communications, Nature Publishing Group, 2020, 11 (1), ⟨10.1038/s41467-019-14051-y⟩
Nature Communications
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-019-14051-y⟩
Nature communications, vol 11, iss 1
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Kjærbølling, I, Vesth, T C, Frisvad, J C, Nybo, J L, Theobald, S, Kildgaard, S, Petersen, T I, Kuo, A, Sato, A, Lyhne, E K, Kogle, M E, Wiebenga, A, Kun, R S, Lubbers, R J M, Mäkelä, M R, Barry, K, Chovatia, M, Clum, A, Daum, C, Haridas, S, He, G, LaButti, K, Lipzen, A, Mondo, S, Pangilinan, J, Riley, R, Salamov, A, Simmons, B A, Magnuson, J K, Henrissat, B, Mortensen, U H, Larsen, T O, de Vries, R P, Grigoriev, I V, Machida, M, Baker, S E & Andersen, M R 2020, ' A comparative genomics study of 23 Aspergillus species from section Flavi ', Nature Communications, vol. 11, no. 1, 1106 . https://doi.org/10.1038/s41467-019-14051-y
Nature Communications, Nature Publishing Group, 2020, 11 (1), ⟨10.1038/s41467-019-14051-y⟩
Section Flavi encompasses both harmful and beneficial Aspergillus species, such as Aspergillus oryzae, used in food fermentation and enzyme production, and Aspergillus flavus, food spoiler and mycotoxin producer. Here, we sequence 19 genomes spanning
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c3cf4f1e909ec8450cf78e8dad44604
https://dspace.library.uu.nl/handle/1874/411033
https://dspace.library.uu.nl/handle/1874/411033
Publikováno v:
BMC Genomics
Theobald, S, Vesth, T C & Andersen, M R 2019, ' Genus level analysis of PKS-NRPS and NRPS-PKS hybrids reveals their origin in Aspergilli ', BMC Genomics, vol. 20, no. 1, 847 . https://doi.org/10.1186/s12864-019-6114-2
BMC Genomics, Vol 20, Iss 1, Pp 1-12 (2019)
Theobald, S, Vesth, T C & Andersen, M R 2019, ' Genus level analysis of PKS-NRPS and NRPS-PKS hybrids reveals their origin in Aspergilli ', BMC Genomics, vol. 20, no. 1, 847 . https://doi.org/10.1186/s12864-019-6114-2
BMC Genomics, Vol 20, Iss 1, Pp 1-12 (2019)
Background Filamentous fungi produce a vast amount of bioactive secondary metabolites (SMs) synthesized by e.g. hybrid polyketide synthase-nonribosomal peptide synthetase enzymes (PKS-NRPS; NRPS-PKS). While their domain structure suggests a common an
Publikováno v:
Comprehensive Biotechnology
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1808e6cd06822b725dadd992fbd4e70a
https://doi.org/10.1016/b978-0-444-64046-8.00202-0
https://doi.org/10.1016/b978-0-444-64046-8.00202-0
Autor:
Jens Christian Frisvad, Jakob K. H. Rendsvig, Asaf Salamov, Thomas Ostenfeld Larsen, Tammi Camilla Vesth, Mikael Rørdam Andersen, Lucas M. Abreu, Kristian Fog Nielsen, Jakob Blæsbjerg Hoof, Robert Riley, Sebastian Theobald
Publikováno v:
Scientific reports, vol 8, iss 1
Theobald, S, Vesth, T C, Rendsvig, J K, Nielsen, K F, Riley, R, de Abreu, L M, Salamov, A, Frisvad, J C, Larsen, T O, Andersen, M R & Hoof, J B 2018, ' Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication ', Scientific Reports, vol. 8, 17957 . https://doi.org/10.1038/s41598-018-36561-3
Scientific Reports
Scientific Reports, Vol 8, Iss 1, Pp 1-12 (2018)
Theobald, S, Vesth, T C, Rendsvig, J K, Nielsen, K F, Riley, R, de Abreu, L M, Salamov, A, Frisvad, J C, Larsen, T O, Andersen, M R & Hoof, J B 2018, ' Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication ', Scientific Reports, vol. 8, 17957 . https://doi.org/10.1038/s41598-018-36561-3
Scientific Reports
Scientific Reports, Vol 8, Iss 1, Pp 1-12 (2018)
The increased interest in secondary metabolites (SMs) has driven a number of genome sequencing projects to elucidate their biosynthetic pathways. As a result, studies revealed that the number of secondary metabolite gene clusters (SMGCs) greatly outn
Autor:
Robert Riley, Martin Engelhard Kogle, Jakob Blæsbjerg Hoof, Kerrie Barry, Kimchi Strasser, Ronald P. de Vries, Kurt LaButti, Jon K. Magnuson, Alicia Clum, Pallavi A. Phatale, Tammi Camilla Vesth, Matt Nolan, Ad Wiebenga, John M. Gladden, Scott E. Baker, Sebastian Theobald, Jens Christian Frisvad, Blake A. Simmons, Kristian Fog Nielsen, Miia R. Mäkelä, Sajeet Haridas, Laura Sandor, Ellen Kirstine Lyhne, Asaf Salamov, Mikael Rørdam Andersen, Igor V. Grigoriev, Matthieu Hainaut, Thomas Ostenfeld Larsen, Elodie Drula, Jane L. Nybo, Cindy Chen, Julian Brandl, Anna Lipzen, Bernard Henrissat, Uffe Hasbro Mortensen, Erin McDonnell, Alan Kuo, Morten Thrane Nielsen, Adrian Tsang
Publikováno v:
Nature Genetics
Nature Genetics, Nature Publishing Group, 2018, 50 (12), pp.1688-1695. ⟨10.1038/s41588-018-0246-1⟩
Nature Genetics, 50(12), 1688-+. Nature Publishing Group
Nature Genetics, 2018, 50 (12), pp.1688-1695. ⟨10.1038/s41588-018-0246-1⟩
Nature genetics, vol 50, iss 12
Vesth, TC; Nybo, JL; Theobald, S; Frisvad, JC; Larsen, TO; Nielsen, KF; et al.(2018). Investigation of inter-and intraspecies variation through genome sequencing of Aspergillus section Nigri. Nature Genetics. doi: 10.1038/s41588-018-0246-1. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/37c6r9tq
Vesth, T C, Nybo, J L, Theobald, S, Frisvad, J C, Larsen, T O, Nielsen, K F, Hoof, J B, Brandl, J, Salamov, A, Riley, R, Gladden, J M, Phatale, P, Nielsen, M T, Lyhne, E K, Kogle, M E, Strasser, K, McDonnell, E, Barry, K, Clum, A, Chen, C, LaButti, K, Haridas, S, Nolan, M, Sandor, L, Kuo, A, Lipzen, A, Hainaut, M, Drula, E, Tsang, A, Magnuson, J K, Henrissat, B, Wiebenga, A, Simmons, B A, Mäkelä, M R, de Vries, R P, Grigoriev, I V, Mortensen, U H, Baker, S E & Andersen, M R 2018, ' Investigation of inter-and intraspecies variation through genome sequencing of Aspergillus section Nigri ', Nature Genetics, vol. 50, pp. 1688–1695 . https://doi.org/10.1038/s41588-018-0246-1
Nature Genetics, 50, 1688. Nature Publishing Group
Nature Genetics, Nature Publishing Group, 2018, 50 (12), pp.1688-1695. ⟨10.1038/s41588-018-0246-1⟩
Nature Genetics, 50(12), 1688-+. Nature Publishing Group
Nature Genetics, 2018, 50 (12), pp.1688-1695. ⟨10.1038/s41588-018-0246-1⟩
Nature genetics, vol 50, iss 12
Vesth, TC; Nybo, JL; Theobald, S; Frisvad, JC; Larsen, TO; Nielsen, KF; et al.(2018). Investigation of inter-and intraspecies variation through genome sequencing of Aspergillus section Nigri. Nature Genetics. doi: 10.1038/s41588-018-0246-1. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/37c6r9tq
Vesth, T C, Nybo, J L, Theobald, S, Frisvad, J C, Larsen, T O, Nielsen, K F, Hoof, J B, Brandl, J, Salamov, A, Riley, R, Gladden, J M, Phatale, P, Nielsen, M T, Lyhne, E K, Kogle, M E, Strasser, K, McDonnell, E, Barry, K, Clum, A, Chen, C, LaButti, K, Haridas, S, Nolan, M, Sandor, L, Kuo, A, Lipzen, A, Hainaut, M, Drula, E, Tsang, A, Magnuson, J K, Henrissat, B, Wiebenga, A, Simmons, B A, Mäkelä, M R, de Vries, R P, Grigoriev, I V, Mortensen, U H, Baker, S E & Andersen, M R 2018, ' Investigation of inter-and intraspecies variation through genome sequencing of Aspergillus section Nigri ', Nature Genetics, vol. 50, pp. 1688–1695 . https://doi.org/10.1038/s41588-018-0246-1
Nature Genetics, 50, 1688. Nature Publishing Group
© 2018, This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply. Aspergillus section Nigri comprises filamentous fungi relevant to biomedicine, bioenergy, health, and biotechnology. To le
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a11ff4506d0cc40cbfeb88507ec955b0
https://hal-amu.archives-ouvertes.fr/hal-02094492
https://hal-amu.archives-ouvertes.fr/hal-02094492
Autor:
Inge, Kjærbølling, Tammi C, Vesth, Jens C, Frisvad, Jane L, Nybo, Sebastian, Theobald, Alan, Kuo, Paul, Bowyer, Yudai, Matsuda, Stephen, Mondo, Ellen K, Lyhne, Martin E, Kogle, Alicia, Clum, Anna, Lipzen, Asaf, Salamov, Chew Yee, Ngan, Chris, Daum, Jennifer, Chiniquy, Kerrie, Barry, Kurt, LaButti, Sajeet, Haridas, Blake A, Simmons, Jon K, Magnuson, Uffe H, Mortensen, Thomas O, Larsen, Igor V, Grigoriev, Scott E, Baker, Mikael R, Andersen
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America. 115(4)
The genus of Aspergillus holds fungi relevant to plant and human pathology, food biotechnology, enzyme production, model organisms, and a selection of extremophiles. Here we present six whole-genome sequences that represent unexplored branches of the
Autor:
Sebastian Theobald, Tammi Camilla Vesth, Jane Lind Nybo, Inge Kjærbølling, Jens Frisvad, Kristian Fog Nielsen, Thomas Ostenfeld Larsen, Grigoriev, Igor V., Asaf Salamov, Uffe Mortensen, Baker, Scott E., Mikael Rørdam Andersen
Publikováno v:
Theobald, S, Vesth, T C, Rasmussen, J L N, Kjærbølling, I, Frisvad, J C, Nielsen, K F, Larsen, T O, Grigoriev, I V, Salamov, A, Mortensen, U H, Baker, S E & Andersen, M R 2017, ' Genus level analysis of secondary metabolism reveals the origin of Aspergillus hybrid NRPS-PKS gene clusters ', 14th International Aspergillus Meeting, Pacific Grove, United States, 13/04/2017-14/04/2017 .
Technical University of Denmark Orbit
Technical University of Denmark Orbit
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::31b7a737e78fc738ec4f034b45204d69
https://orbit.dtu.dk/en/publications/9d90f976-ad71-4c1d-8e05-a9f41ab579ce
https://orbit.dtu.dk/en/publications/9d90f976-ad71-4c1d-8e05-a9f41ab579ce