Zobrazeno 1 - 10
of 23
pro vyhledávání: '"Sean R Johnson"'
Publikováno v:
eLife, Vol 12 (2024)
Accurately detecting distant evolutionary relationships between proteins remains an ongoing challenge in bioinformatics. Search methods based on primary sequence struggle to accurately detect homology between sequences with less than 20% amino acid i
Externí odkaz:
https://doaj.org/article/9a1b502e09ad41f1a33d993877310446
Autor:
Sean R Johnson, Bernd Markus Lange
Publikováno v:
Frontiers in Bioengineering and Biotechnology, Vol 3 (2015)
Various databases have been developed to aid in assigning structures to spectral peaks observed in metabolomics experiments. In this review article, we discuss the utility of currently available open-access spectral and chemical databases for natural
Externí odkaz:
https://doaj.org/article/778eea2977ec43c59ec9f77266b9ba3d
Autor:
Fani Ntana, Sean R. Johnson, Björn Hamberger, Birgit Jensen, Hans J. L. Jørgensen, David B. Collinge
Publikováno v:
Microorganisms, Vol 10, Iss 1, p 194 (2022)
Specialised metabolites produced during plant-fungal associations often define how symbiosis between the plant and the fungus proceeds. They also play a role in the establishment of additional interactions between the symbionts and other organisms pr
Externí odkaz:
https://doaj.org/article/705fbb8bdb9d427590f8450660037ee5
Autor:
Fani Ntana, Wajid W. Bhat, Sean R. Johnson, Hans J. L. Jørgensen, David B. Collinge, Birgit Jensen, Björn Hamberger
Publikováno v:
Biomolecules, Vol 11, Iss 6, p 898 (2021)
Interactions between plant-associated fungi and their hosts are characterized by a continuous crosstalk of chemical molecules. Specialized metabolites are often produced during these associations and play important roles in the symbiosis between the
Externí odkaz:
https://doaj.org/article/9781ebe202514fcf93b0864420db8641
Autor:
Stefan Kuhn, Sean R. Johnson
Publikováno v:
ACS Omega. 8:18339-18339
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::925355efc028124310a8dc667b2dbde8
https://doi.org/10.1021/acsomega.3c02687
https://doi.org/10.1021/acsomega.3c02687
Autor:
Wajid Waheed Bhat, Emily R. Lanier, Björn Hamberger, Garret P. Miller, Sean R. Johnson, Davis T. Mathieu
Publikováno v:
The Plant journal : for cell and molecular biology
SUMMARY Serrulatane diterpenoids are natural products found in plants from a subset of genera within the figwort family (Scrophulariaceae). Many of these compounds have been characterized as having anti-microbial properties and share a common diterpe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::69e89b8f04e5ba436c43bf22655a2a9e
http://europepmc.org/articles/PMC7649979
http://europepmc.org/articles/PMC7649979
Autor:
Garret P. Miller, Wajid Waheed Bhat, Björn Hamberger, Sean R. Johnson, Alekzander Sky Garcia, Radin Sadre
Publikováno v:
The New Phytologist
Summary The mint family (Lamiaceae) is well documented as a rich source of terpene natural products. More than 200 diterpene skeletons have been reported from mints, but biosynthetic pathways are known for just a few of these.We crossreferenced chemo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e344fcb24e768cdcc8053a66ea0e5575
http://europepmc.org/articles/PMC6593445
http://europepmc.org/articles/PMC6593445
Autor:
Sean R. Johnson, Wajid Waheed Bhat, Jacob Bibik, Aiko Turmo, Britta Hamberger, null Evolutionary Mint Genomics Consortium, Björn Hamberger
Publikováno v:
The Journal of Biological Chemistry
Journal of Biological Chemistry
Journal of Biological Chemistry
Members of the mint family (Lamiaceae) accumulate a wide variety of industrially and medicinally relevant diterpenes. We recently sequenced leaf transcriptomes from 48 phylogenetically diverse Lamiaceae species. Here, we summarize the available chemo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::03199367349a407845c4215e038f6fe5
https://doi.org/10.1074/jbc.ra118.006025
https://doi.org/10.1074/jbc.ra118.006025
Recently developed language models (LMs) based on deep neural networks have demonstrated the ability to generate fluent natural language text. LMs pre-trained on protein sequences have shown state of the art performance on a variety of downstream tas
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::30c8595d9ed941fcc56473e52086141d
https://doi.org/10.1101/2021.01.26.428322
https://doi.org/10.1101/2021.01.26.428322
Autor:
Daniel Moser, Jonathan A Arnesen, Bjoern Hamberger, Aparajita Banerjee, Balindile B Motsa, Sean R. Johnson
Publikováno v:
Planta. 249:221-233
Modular assembly and heterologous expression in the moss Physcomitrella patens of pairs of diterpene synthases results in accumulation of modern land plant diterpenoids. Physcomitrella patens is a representative of the ancient bryophyte plant lineage
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7eb2add77e918b8113d9febe70cc8e11
https://doi.org/10.1007/s00425-018-3053-0
https://doi.org/10.1007/s00425-018-3053-0