Zobrazeno 1 - 10
of 36
pro vyhledávání: '"Sean M Colby"'
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-9 (2018)
Abstract Background Relatively small changes to gene expression data dramatically affect co-expression networks inferred from that data which, in turn, can significantly alter the subsequent biological interpretation. This error propagation is an und
Externí odkaz:
https://doaj.org/article/d146200cab9d448bbfe882e1a2a52cfd
Autor:
Kenton A Rod, Wooyong Um, Sean M Colby, Mark L Rockhold, Christopher E Strickland, Sangsoo Han, Andrew P Kuprat
Publikováno v:
PLoS ONE, Vol 14, Iss 1, p e0210741 (2019)
Relative permeability is an important attribute influencing subsurface multiphase flow. Characterization of relative permeability is necessary to support activities such as carbon sequestration, geothermal energy production, and oil and gas explorati
Externí odkaz:
https://doaj.org/article/17c4659d2b444448aa6e943fb25273eb
Autor:
Felicity F. Nielson, Bill Kay, Stephen J. Young, Sean M. Colby, Ryan S. Renslow, Thomas O. Metz
Publikováno v:
Metabolites, Vol 13, Iss 11, p 1158 (2023)
There were missing figures and associated legends for Figure 3 and Figure 4 as published due to a publication error [...]
Externí odkaz:
https://doaj.org/article/19d78090fb9e481bb8768e5eb21739b6
Autor:
Felicity F. Nielson, Bill Kay, Stephen J. Young, Sean M. Colby, Ryan S. Renslow, Thomas O. Metz
Publikováno v:
Metabolites, Vol 13, Iss 1, p 105 (2023)
Computational methods for creating in silico libraries of molecular descriptors (e.g., collision cross sections) are becoming increasingly prevalent due to the limited number of authentic reference materials available for traditional library building
Externí odkaz:
https://doaj.org/article/41a3b71695bf483995f34029fc39cc4b
Autor:
Tong Shen, Ciara Conway, Kaitlin R. Rempfert, Jennifer E. Kyle, Sean M. Colby, David A. Gaul, Hani Habra, Fanzhou Kong, Kent J. Bloodsworth, Douglas Allen, Bradley S. Evans, Xiuxia Du, Facundo M. Fernandez, Thomas O. Metz, Oliver Fiehn, Charles R. Evans
Publikováno v:
bioRxiv
Untargeted lipidomics allows analysis of a broader range of lipids than targeted methods and permits discovery of unknown compounds. Previous ring trials have evaluated the reproducibility of targeted lipidomics methods, but inter-laboratory comparis
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4d7c51e53d9410b8aab484282ec3baa5
https://doi.org/10.1101/2023.02.01.526566
https://doi.org/10.1101/2023.02.01.526566
Autor:
Amy T. Merrill, Lee-Ping Wang, Arthur S. Edison, Susanta Das, Shunyang Wang, Jesi Lee, Kenneth M. Merz, Ryan S. Renslow, Oliver Fiehn, Thomas O. Metz, Tobias Kind, Dean J. Tantillo, Ricardo Moreira Borges, Sean M. Colby, Jamie R. Nuñez
Publikováno v:
Chemical Reviews. 121:5633-5670
A primary goal of metabolomics studies is to fully characterize the small-molecule composition of complex biological and environmental samples. However, despite advances in analytical technologies over the past two decades, the majority of small mole
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8ff229317a29539c1c2e86f50ffe4cdb
https://doi.org/10.1021/acs.chemrev.0c00901
https://doi.org/10.1021/acs.chemrev.0c00901
Autor:
Jamey D. Young, Ryan S. Renslow, Gary J. Patti, Hui Yin Chang, Maximilian J. Helf, Shuzhao Li, Sean M. Colby, Javier D. Gomez, Jianguo Xia, Katerina Kechris, Christine Kirkpatrick, Mukesh Verma, Xiuxia Du, Shankar Subramaniam
Publikováno v:
Analytical Chemistry
A growing number of software tools have been developed for metabolomics data processing and analysis. Many new tools are contributed by metabolomics practitioners who have limited prior experience with software development, and the tools are subseque
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c1d30831306458be6127675005f75e0c
http://europepmc.org/articles/PMC7859930
http://europepmc.org/articles/PMC7859930
Autor:
Sean M. Colby, Christine H. Chang, Jessica L. Bade, Jamie R. Nunez, Madison R. Blumer, Daniel J. Orton, Kent J. Bloodsworth, Ernesto S. Nakayasu, Richard D. Smith, Yehia M. Ibrahim, Ryan S. Renslow, Thomas O. Metz
Publikováno v:
Analytical chemistry. 94(16)
We present DEIMoS: Data Extraction for Integrated Multidimensional Spectrometry, a Python application programming interface (API) and command-line tool for high-dimensional mass spectrometry data analysis workflows that offers ease of development and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c4dc1838a89006f2ba234575f191ca34
https://pubmed.ncbi.nlm.nih.gov/35430813
https://pubmed.ncbi.nlm.nih.gov/35430813
Autor:
Christine H. Chang, Evangelina Brayfindley, Jamie R. Nuñez, Sean M. Colby, Madison R. Blumer, Thomas O. Metz, Ryan S. Renslow
Publikováno v:
J Chem Inf Model
We describe the Mass Spectrometry Adduct Calculator (MSAC), an automated Python tool to calculate the adduct ion masses of a parent molecule. Here, adduct refers to a version of a parent molecule [M] that is charged due to addition or loss of atoms a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e06c91aebc38bfa245be646400adfd9c
https://europepmc.org/articles/PMC9529534/
https://europepmc.org/articles/PMC9529534/
Autor:
Ryan S. Renslow, Elin M. Ulrich, Jon R. Sobus, Jamie R. Nuñez, Sean M. Colby, Malak M. Tfaily, Justin G. Teeguarden, Dennis G. Thomas, Nikola Tolić, Thomas O. Metz
Publikováno v:
Journal of Chemical Information and Modeling. 59:4052-4060
The current gold standard for unambiguous molecular identification in metabolomics analysis is comparing two or more orthogonal properties from the analysis of authentic reference materials (standa...
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::06cdf617df731b2007e518732c3a828d
https://doi.org/10.1021/acs.jcim.9b00444
https://doi.org/10.1021/acs.jcim.9b00444