Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Schlaffner CN"'
Current tools for visualization and integration of proteomics with other omics datasets are inadequate for large-scale studies and capture only basic sequence identity information. We developed PoGo for mapping peptides identified through mass spectr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f75a8a28450ee0b2455a2efbd36e1ffc
https://doi.org/10.1101/079772
https://doi.org/10.1101/079772
Autor:
Pietz T; Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, 14482, Germany., Gupta S; Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, 14482, Germany.; Department of Computer Science and Engineering, Indian Institute of Technology, Ropar, Rupnagar, 140001, India., Schlaffner CN; Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, 14482, Germany.; Department of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, MA, 02115, United States., Ahmed S; Department of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, MA, 02115, United States., Steen H; Department of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, MA, 02115, United States., Renard BY; Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, 14482, Germany.; Windreich Department for Artificial Intelligence and Human Health and Hasso Plattner Institute at Mount Sinai, Icahn School of Medicine at Mount Sinai, New York City, NY, 10029, United States., Baum K; Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, 14482, Germany.; Windreich Department for Artificial Intelligence and Human Health and Hasso Plattner Institute at Mount Sinai, Icahn School of Medicine at Mount Sinai, New York City, NY, 10029, United States.; Department of Mathematics and Computer Science, Free University Berlin, Berlin, 14195, Germany.
Publikováno v:
Bioinformatics (Oxford, England) [Bioinformatics] 2024 Sep 01; Vol. 40 (Suppl 2), pp. ii70-ii78.
Autor:
Kumar M; Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA 02115, USA., Quittot N; Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.; Alzheimer Research Unit, Department of Neurology, Massachusetts General Hospital, Boston, MA 02129, USA., Dujardin S; Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.; Alzheimer Research Unit, Department of Neurology, Massachusetts General Hospital, Boston, MA 02129, USA., Schlaffner CN; Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA 02115, USA., Viode A; Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.; Department of Pathology, Boston Children's Hospital, Boston, MA 02115, USA., Wiedmer A; Alzheimer Research Unit, Department of Neurology, Massachusetts General Hospital, Boston, MA 02129, USA., Beerepoot P; Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA 02115, USA., Chun JE; Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.; Alzheimer Research Unit, Department of Neurology, Massachusetts General Hospital, Boston, MA 02129, USA., Glynn C; Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.; Alzheimer Research Unit, Department of Neurology, Massachusetts General Hospital, Boston, MA 02129, USA., Fernandes AR; Alzheimer Research Unit, Department of Neurology, Massachusetts General Hospital, Boston, MA 02129, USA., Donahue C; Alzheimer Research Unit, Department of Neurology, Massachusetts General Hospital, Boston, MA 02129, USA., Steen JA; Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA 02115, USA., Hyman BT; Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.; Alzheimer Research Unit, Department of Neurology, Massachusetts General Hospital, Boston, MA 02129, USA.
Publikováno v:
Brain : a journal of neurology [Brain] 2024 Feb 01; Vol. 147 (2), pp. 637-648.
Autor:
Fujimura K; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.; Division of Genetics and Genomics and The Manton Center for Orphan Disease, Boston Children's Hospital, Department of Pediatrics, Harvard Medical School, Boston, MA, USA.; Department of Pediatrics, Keio University School of Medicine, Tokyo, Japan.; Department of Pediatrics, Shin-Yurigaoka General Hospital, Kanagawa, Japan., Guise AJ; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Nakayama T; Division of Genetics and Genomics and The Manton Center for Orphan Disease, Boston Children's Hospital, Department of Pediatrics, Harvard Medical School, Boston, MA, USA., Schlaffner CN; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Meziani A; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Kumar M; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Cheng L; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Vaughan DJ; Division of Genetics and Genomics and The Manton Center for Orphan Disease, Boston Children's Hospital, Department of Pediatrics, Harvard Medical School, Boston, MA, USA., Kodani A; Center for Pediatric Neurological Disease Research and Department of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, USA., Van Haren S; Precision Vaccines Program, Division of Infectious Diseases, Boston Children's Hospital, Department of Pediatrics, Harvard Medical School, Boston, MA, USA., Parker K; SimulTOF Systems, Marlborough, MA, USA., Levy O; Precision Vaccines Program, Division of Infectious Diseases, Boston Children's Hospital, Department of Pediatrics, Harvard Medical School, Boston, MA, USA.; Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA., Durbin AF; Department of Microbiology, Harvard Medical School, Boston, MA, USA.; Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Bosch I; Department of Microbiology, Harvard Medical School, Boston, MA, USA.; Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Gehrke L; Department of Microbiology, Harvard Medical School, Boston, MA, USA.; Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Steen H; Precision Vaccines Program, Division of Infectious Diseases, Boston Children's Hospital, Department of Pediatrics, Harvard Medical School, Boston, MA, USA.; Department of Pathology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Mochida GH; Division of Genetics and Genomics and The Manton Center for Orphan Disease, Boston Children's Hospital, Department of Pediatrics, Harvard Medical School, Boston, MA, USA.; Pediatric Neurology Unit, Department of Neurology, Massachusetts General Hospital, Boston, MA, USA., Steen JA; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Publikováno v:
IScience [iScience] 2023 May 19; Vol. 26 (7), pp. 106909. Date of Electronic Publication: 2023 May 19 (Print Publication: 2023).
Autor:
Wenger K; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital and Harvard, Medical School; Center for Life Science, RM 12030, 3 Blackfan Circle, Boston, MA 02115, USA., Viode A; Departments of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, MA, USA., Schlaffner CN; Departments of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, MA, USA.; Data Analytics and Computational Statistics, Hasso-Plattner-Institute, Faculty of Digital Engineering; University of Potsdam, Potsdam, Germany., van Zalm P; Departments of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, MA, USA., Cheng L; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital and Harvard, Medical School; Center for Life Science, RM 12030, 3 Blackfan Circle, Boston, MA 02115, USA., Dellovade T; AbbVie, Cambridge Research Center, Cambridge, MA, USA., Langlois X; AbbVie, Cambridge Research Center, Cambridge, MA, USA., Bannon A; AbbVie, Cambridge Research Center, Cambridge, MA, USA., Chang R; AbbVie, Cambridge Research Center, Cambridge, MA, USA., Connors TR; Massachusetts Alzheimer's Disease Research Center, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA., Oakley D; Massachusetts Alzheimer's Disease Research Center, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA., Renard B; Data Analytics and Computational Statistics, Hasso-Plattner-Institute, Faculty of Digital Engineering; University of Potsdam, Potsdam, Germany., Rappsilber J; Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany., Hyman B; Massachusetts Alzheimer's Disease Research Center, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA., Steen H; Departments of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, MA, USA.; Neurobiology Program, Boston Children's Hospital, Boston, MA, USA., Steen JA; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital and Harvard, Medical School; Center for Life Science, RM 12030, 3 Blackfan Circle, Boston, MA 02115, USA. judith.steen@childrens.harvard.edu.
Publikováno v:
Molecular neurodegeneration [Mol Neurodegener] 2023 Feb 02; Vol. 18 (1), pp. 10. Date of Electronic Publication: 2023 Feb 02.
Autor:
van Zalm P; Department of Pathology, Boston Children's Hospital, and Department of Pathology, Harvard Medical School, Boston, Massachusetts 02115, United States.; Department of Neuropsychology and Psychopharmacology, EURON, Faculty of Psychology and Neuroscience, Maastricht University, Maastricht 6229ER, The Netherlands., Viodé A; Department of Pathology, Boston Children's Hospital, and Department of Pathology, Harvard Medical School, Boston, Massachusetts 02115, United States., Smolen K; Precision Vaccines Program, Boston Children's Hospital, Boston, Massachusetts 02115, United States.; Harvard Medical School, Boston, Massachusetts 02115, United States., Fatou B; Department of Pathology, Boston Children's Hospital, and Department of Pathology, Harvard Medical School, Boston, Massachusetts 02115, United States.; Precision Vaccines Program, Boston Children's Hospital, Boston, Massachusetts 02115, United States., Hayati AN; Research Computing, Information Services Department, Boston Children's Hospital, Boston, Massachusetts 02115, United States., Schlaffner CN; F.M. Kirby Neurobiology Center, Boston Children's Hospital, and Department of Neurology, Harvard Medical School, Boston, Massachusetts 02115, United States.; Data Analytics and Computational Statistics, Hasso-Plattner-Institute, Faculty of Digital Engineering, University of Potsdam, Potsdam 14482, Germany., Levy O; Precision Vaccines Program, Boston Children's Hospital, Boston, Massachusetts 02115, United States.; Harvard Medical School, Boston, Massachusetts 02115, United States.; Broad Institute of MIT & Harvard, Cambridge, Massachusetts 02142, United States.; Division of Infectious Diseases, Department of Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, United States., Steen J; F.M. Kirby Neurobiology Center, Boston Children's Hospital, and Department of Neurology, Harvard Medical School, Boston, Massachusetts 02115, United States., Steen H; Department of Pathology, Boston Children's Hospital, and Department of Pathology, Harvard Medical School, Boston, Massachusetts 02115, United States.; Precision Vaccines Program, Boston Children's Hospital, Boston, Massachusetts 02115, United States.; Neurobiology Program, Boston Children's Hospital, Boston, Massachusetts 02115, United States.
Publikováno v:
Journal of proteome research [J Proteome Res] 2022 Nov 04; Vol. 21 (11), pp. 2810-2814. Date of Electronic Publication: 2022 Oct 06.
Autor:
Bennike TB, Templeton K; Division of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital., Fujimura K; F.M. Kirby Neurobiology Center, Boston Children's Hospital and Harvard Medical School, Boston, MA., Bellin MD, Ahmed S; From the Department of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, MA., Schlaffner CN, Arora R; Department of Pathology, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA., Cruz-Monserrate Z; Division of Gastroenterology, Hepatology and Nutrition, Comprehensive Cancer Center, The Ohio State University Wexner Medical Center, Columbus, OH., Arnaout R; Department of Pathology, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA., Beilman GJ; Department of Surgery, University of Minnesota Medical School, Minneapolis, MN., Grover AS, Conwell DL; Division of Gastroenterology, Hepatology and Nutrition, Comprehensive Cancer Center, The Ohio State University Wexner Medical Center, Columbus, OH., Steen H; From the Department of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, MA.
Publikováno v:
Pancreas [Pancreas] 2022 May 01; Vol. 51 (5), pp. 435-444. Date of Electronic Publication: 2022 Jul 27.
Autor:
Hiort P; Department of Pathology, Boston Children's Hospital, Boston, Massachusetts 02115, United States.; Data Analytics and Computational Statistics, Hasso-Plattner-Institute, Faculty of Digital Engineering, University of Potsdam, Potsdam 14482, Germany., Schlaffner CN; Department of Pathology, Boston Children's Hospital, Boston, Massachusetts 02115, United States.; Data Analytics and Computational Statistics, Hasso-Plattner-Institute, Faculty of Digital Engineering, University of Potsdam, Potsdam 14482, Germany.; F. M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, Massachusetts 02115, United States.; Department of Neurology, Harvard Medical School, Boston, Massachusetts 02115, United States., Steen JA; F. M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, Massachusetts 02115, United States.; Department of Neurology, Harvard Medical School, Boston, Massachusetts 02115, United States.; Neurobiology Program, Boston Children's Hospital, Boston, Massachusetts 02115, United States., Renard BY; Data Analytics and Computational Statistics, Hasso-Plattner-Institute, Faculty of Digital Engineering, University of Potsdam, Potsdam 14482, Germany., Steen H; Department of Pathology, Boston Children's Hospital, Boston, Massachusetts 02115, United States.; Neurobiology Program, Boston Children's Hospital, Boston, Massachusetts 02115, United States.; Department of Pathology, Harvard Medical School, Boston, Massachusetts 02115, United States.; Precision Vaccines Program, Boston Children's Hospital, Boston, Massachusetts 02115, United States.
Publikováno v:
Journal of proteome research [J Proteome Res] 2022 Apr 01; Vol. 21 (4), pp. 899-909. Date of Electronic Publication: 2022 Jan 27.
Autor:
Wesseling H; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Mair W; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Kumar M; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Schlaffner CN; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Tang S; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA; Department of Pathology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Beerepoot P; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Fatou B; Department of Pathology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Guise AJ; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Cheng L; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Takeda S; Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA 02129, USA; Department of Clinical Gene Therapy, Graduate School of Medicine, Osaka University, Yamadaoka, Suita, Osaka 565-0871, Japan., Muntel J; Department of Pathology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Rotunno MS; Department of Pathology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Dujardin S; Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA 02129, USA., Davies P; Feinstein Institutes for Medical Research, Manhasset, NY 11030, USA., Kosik KS; Neuroscience Research Institute and Department of Molecular, Cellular, and Developmental Biology, UCSB, Santa Barbara, CA 93106, USA., Miller BL; Department of Neurology, Memory and Aging Center, University of California, San Francisco, San Francisco, CA 94143, USA., Berretta S; Harvard Brain Tissue Resource Center (HBTRC), McLean Hospital, Belmont, MA 02478, USA., Hedreen JC; Harvard Brain Tissue Resource Center (HBTRC), McLean Hospital, Belmont, MA 02478, USA., Grinberg LT; Department of Neurology, Memory and Aging Center, University of California, San Francisco, San Francisco, CA 94143, USA; Department of Pathology, University of California, San Francisco, San Francisco, CA 94143-0511, USA., Seeley WW; Department of Neurology, Memory and Aging Center, University of California, San Francisco, San Francisco, CA 94143, USA; Department of Pathology, University of California, San Francisco, San Francisco, CA 94143-0511, USA., Hyman BT; Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA 02129, USA., Steen H; Department of Pathology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA., Steen JA; F.M. Kirby Neurobiology Center, Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA. Electronic address: judith.steen@childrens.harvard.edu.
Publikováno v:
Cell [Cell] 2020 Dec 10; Vol. 183 (6), pp. 1699-1713.e13. Date of Electronic Publication: 2020 Nov 13.
Autor:
Schlaffner CN; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, United States.; Department of Neurology, Harvard Medical School, Boston, United States., Kahnert K; Department of Pathology, Boston Children's Hospital, Boston, United States.; Bioinformatics Unit (MF1), Robert Koch Institute, Berlin, Germany.; Department of Medical Biotechnology, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany., Muntel J; Department of Pathology, Boston Children's Hospital, Boston, United States.; Department of Pathology, Harvard Medical School, Boston, United States., Chauhan R; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, United States., Renard BY; Bioinformatics Unit (MF1), Robert Koch Institute, Berlin, Germany.; Data Analytics and Computational Statistics, Hasso-Plattner-Institute, Faculty of Digital Engineering, University of Potsdam, Potsdam, Germany., Steen JA; F.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, United States.; Department of Neurology, Harvard Medical School, Boston, United States., Steen H; Department of Pathology, Boston Children's Hospital, Boston, United States.; Department of Pathology, Harvard Medical School, Boston, United States.; Precision Vaccines Program, Boston Children's Hospital, Boston, United States.
Publikováno v:
ELife [Elife] 2020 Dec 07; Vol. 9. Date of Electronic Publication: 2020 Dec 07.