Multiple Comparative Metagenomics using Multiset k-mer Counting

Autor: Benoit, Gaëtan, Peterlongo, Pierre, Mariadassou, Mahendra, Drezen, Erwan, Schbath, Sophie, Lavenier, Dominique, Lemaitre, Claire

Background. Large scale metagenomic projects aim to extract biodiversity knowledge between different environmental conditions. Current methods for comparing microbial communities face important limitations. Those based on taxonomical or functional as

Externí odkaz: http://arxiv.org/abs/1604.02412

DUGMO: tool for the detection of unknown genetically modified organisms with high-throughput sequencing data for pure bacterial samples.

Autor: Hurel, Julie¹ (AUTHOR), Schbath, Sophie² (AUTHOR), Bougeard, Stéphanie³ (AUTHOR), Rolland, Mathieu⁴ (AUTHOR), Petrillo, Mauro⁵ (AUTHOR), Touzain, Fabrice¹ (AUTHOR) fabrice.touzain@anses.fr

Publikováno v: BMC Bioinformatics. 7/6/2020, Vol. 21 Issue 1, p1-17. 17p. 2 Diagrams, 1 Chart, 1 Graph.

Shallow Shotgun Metagenomics as a cost-effective and accurate alternative to WGS for taxonomic profiling and clinical diagnosis

Autor: Goutorbe, Benoit, Abraham, Anne-Laure, Mariadassou, Mahendra, Plauzolles, Anne, Bidaut, Ghislain, Halfon, Philippe, Schbath, Sophie

Publikováno v: Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM)
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France
JOBIM
JOBIM, Jul 2021, Paris, France

International audience; Shallow shotgun metagenomics has been recently suggested as a promising strategy to study human microbiota, providing nearly identical taxonomic profiles than deep shotgun metagenomics with a sequencing cost similar to metabar

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::5c6d9730f2be44735992b0af0f43ebb8
https://hal.inrae.fr/hal-03500408/document

Poisson Approximation for the Number of Repeats in a Stationary Markov Chain

Autor: Touyar, Narjiss, Schbath, Sophie, Cellier, Dominique, Dauchel, Hélène

Publikováno v: Journal of Applied Probability, 2008 Jun 01. 45(2), 440-455.

Externí odkaz: https://www.jstor.org/stable/27595956

New insights into cow holobiont in relation to heath

Autor: Even, Sergine, Mariadassou, Mahendra, Nouvel, Xavier, Constant, Fabienne, MORGAVI, Diego, Rault, Lucie, Barbey, Sarah, Helloin, Emmanuelle, Rué, Olivier, Schbath, Sophie, Launay, Frederic, Sandra, Olivier, Lefebvre, Rachel, Le Loir, Yves, Germon, Pierre, Citti, Christine

Publikováno v: 16e congres national de la SFM-MICROBES 2021
16e congres national de la SFM-MICROBES 2021, Sep 2021, Nantes, France

International audience

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::480935d162233f273a478903c96dca10
https://hal.inrae.fr/hal-03361039/document