Výsledky vyhledávání - "Schaik, Willem Van"

Additional file 7: of In-depth resistome analysis by targeted metagenomics

Autor: Lanza, Val, Baquero, Fernando, Martínez, José, Ramos-Ruíz, Ricardo, González-Zorn, Bruno, Andremont, Antoine, Sánchez-Valenzuela, Antonio, Ehrlich, Stanislav, Kennedy, Sean, Ruppé, Etienne, Schaik, Willem Van, Willems, Rob, Cruz, Fernando De La, Coque, Teresa

Gene abundance comparison of metal resistance between swine and human samples. Gene abundance was extracted from original count data after normalization. Some sets of genes make complex MGCs. In this representation, MGC quantification was discarded i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dc9f5c666e58ed215513cec16620cb65

Zobrazit plný text záznamu

Additional file 4: of In-depth resistome analysis by targeted metagenomics

Distribution of read abundance. Figure shows the histograms of read abundance per each gene. Each frame represents a sample, superimposing results from the MSS protocol and the ResCap protocol. A square scale was used for the ordinate axis and a loga

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8d95f8a47b58d564625cdb9430110b0c

Zobrazit plný text záznamu

Additional file 8: of In-depth resistome analysis by targeted metagenomics

MGC abundance comparison of relaxases between swine and human samples. Relaxases were classified by MOB families. MGC abundance was summarized in MOB families. Each MOB family is composed of several MGCs. Genetic abundance is expressed as reads per k

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::991c67001b514e6037c9770e6359d90c

Zobrazit plný text záznamu

Additional file 1: of In-depth resistome analysis by targeted metagenomics

Histogram of gene coverage distribution by hybridizing probes. Two metrics were provided by NimbleGene: direct coverage (red bars) and adjacent coverage (cyan bars). Ninety percent of the genes are covered by at least 96.9% of direct coverage, and 90

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::795c9043cc2797a4bb890b42c5869e35

Zobrazit plný text záznamu

Additional file 2: of In-depth resistome analysis by targeted metagenomics

Blast annotations summary. Summary of the classification steps of assembled genes. The sequential annotation comprises a first blastn search for identifying homologous resistome genes. Genes with an e-value higher than 10−100 were discarded. Filter

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::326d77f17eff17a792e869ab64be199c

Zobrazit plný text záznamu

Additional file 9: of In-depth resistome analysis by targeted metagenomics

Reproducibility of ResCap. Reads from replicates are represented in dot plot to illustrate the linearity of the results from ResCap sequencing. Dots represent the genes detected in any of the replicates. Pearson’s product-moment correlation was use

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::15d91bf4f6c2cd60cc67d465ad1aba2a

Zobrazit plný text záznamu

Additional file 3: of In-depth resistome analysis by targeted metagenomics

Gain function plot for each sample. Representation of the gain in reads per kilobase per million reads of each detected gene between MSS (abscissa axis) and ResCap (ordinate axis). Genes, which were only identified by ResCap, are represented by the d

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3f818fa889859b36dcf72f2288b1a20b

Zobrazit plný text záznamu

Additional file 6: of In-depth resistome analysis by targeted metagenomics

MGC abundance comparison of biocide resistance between swine and human samples. Gene abundance was extracted from original count data after normalization. Some sets of genes make complex MGCs. In this representation, MGC quantification was discarded

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4cbe604c51d5bb488b9036f9c4922f77

Zobrazit plný text záznamu

Vyhledávací nástroje:

Upřesnit hledání