Zobrazeno 1 - 10
of 71
pro vyhledávání: '"Saurabh Baheti"'
Autor:
Jacob R Heldenbrand, Saurabh Baheti, Matthew A Bockol, Travis M Drucker, Steven N Hart, Matthew E Hudson, Ravishankar K Iyer, Michael T Kalmbach, Katherine I Kendig, Eric W Klee, Nathan R Mattson, Eric D Wieben, Mathieu Wiepert, Derek E Wildman, Liudmila S Mainzer
Publikováno v:
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-9 (2019)
Abstract Background Use of the Genome Analysis Toolkit (GATK) continues to be the standard practice in genomic variant calling in both research and the clinic. Recently the toolkit has been rapidly evolving. Significant computational performance impr
Externí odkaz:
https://doaj.org/article/d1ba367575504c22a9097a3dd969475e
Autor:
Soneela Ankam, Amandine Rovini, Saurabh Baheti, Ron Hrstka, Yanhong Wu, Kiley Schmidt, Hailong Wang, Nicolas Madigan, Lena-Sophie Koenig, Kimberly Stelzig, Zachary Resch, Christopher J. Klein, Zhifu Sun, Nathan P. Staff
Publikováno v:
Epigenetics, Vol 14, Iss 9, Pp 927-937 (2019)
Sensory neurons of the peripheral nervous system are critical in health and disease. Sensory neurons derived from induced pluripotent stem (iPS) cells are now being used increasingly for in vitro models of neuropathy, pain, and neurotoxicity. DNA met
Externí odkaz:
https://doaj.org/article/a894bbdaf2d64e82a33d3a559435c7e3
Autor:
Luz Helena Gutierrez Sanchez, Kyoko Tomita, Qianqian Guo, Kunimaro Furuta, Husam Alhuwaish, Petra Hirsova, Saurabh Baheti, Bonnie Alver, Ryan Hlady, Keith D. Robertson, Samar H. Ibrahim
Publikováno v:
Hepatology Communications, Vol 2, Iss 12, Pp 1493-1512 (2018)
With the epidemic of obesity, nonalcoholic fatty liver disease (NAFLD) has become the most common pediatric liver disease. The influence of a perinatal obesity‐inducing diet (OID) on the development and progression of NAFLD in offspring is importan
Externí odkaz:
https://doaj.org/article/76512175caa345c4adc44cee5e560bfa
Autor:
Saurabh Baheti, Xiaojia Tang, Daniel R. O’Brien, Nicholas Chia, Lewis R. Roberts, Heidi Nelson, Judy C. Boughey, Liewei Wang, Matthew P. Goetz, Jean-Pierre A. Kocher, Krishna R. Kalari
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-11 (2018)
Abstract Background Transfer of genetic material from microbes or viruses into the host genome is known as horizontal gene transfer (HGT). The integration of viruses into the human genome is associated with multiple cancers, and these can now be dete
Externí odkaz:
https://doaj.org/article/dda4ddc601e146fea835753436dec370
Autor:
Jacob R. Heldenbrand, Saurabh Baheti, Matthew A. Bockol, Travis M. Drucker, Steven N. Hart, Matthew E. Hudson, Ravishankar K. Iyer, Michael T. Kalmbach, Katherine I. Kendig, Eric W. Klee, Nathan R. Mattson, Eric D. Wieben, Mathieu Wiepert, Derek E. Wildman, Liudmila S. Mainzer
Publikováno v:
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-2 (2019)
Following publication of the original article [1], the author explained that Table 2 is displayed incorrectly. The correct Table 2 is given below. The original article has been corrected.
Externí odkaz:
https://doaj.org/article/1d2bd5275f844ba98289f769d1c30948
Autor:
Katherine I. Kendig, Saurabh Baheti, Matthew A. Bockol, Travis M. Drucker, Steven N. Hart, Jacob R. Heldenbrand, Mikel Hernaez, Matthew E. Hudson, Michael T. Kalmbach, Eric W. Klee, Nathan R. Mattson, Christian A. Ross, Morgan Taschuk, Eric D. Wieben, Mathieu Wiepert, Derek E. Wildman, Liudmila S. Mainzer
Publikováno v:
Frontiers in Genetics, Vol 10 (2019)
As reliable, efficient genome sequencing becomes ubiquitous, the need for similarly reliable and efficient variant calling becomes increasingly important. The Genome Analysis Toolkit (GATK), maintained by the Broad Institute, is currently the widely
Externí odkaz:
https://doaj.org/article/b076819b29154520ae8fcd0ae92e64c5
Autor:
Melissa S DeRycke, Melissa C Larson, Asha A Nair, Shannon K McDonnell, Amy J French, Lori S Tillmans, Shaun M Riska, Saurabh Baheti, Zachary C Fogarty, Nicholas B Larson, Daniel R O'Brien, John C Cheville, Liang Wang, Daniel J Schaid, Stephen N Thibodeau
Publikováno v:
PLoS ONE, Vol 14, Iss 4, p e0214588 (2019)
Prostate cancer (PrCa) is highly heritable; 284 variants have been identified to date that are associated with increased prostate cancer risk, yet few genes contributing to its development are known. Expression quantitative trait loci (eQTL) studies
Externí odkaz:
https://doaj.org/article/2589453335314bebb8adc2f586c7b6d4
Publikováno v:
PLoS ONE, Vol 9, Iss 2, p e86803 (2014)
As the cost of whole genome sequencing (WGS) decreases, clinical laboratories will be looking at broadly adopting this technology to screen for variants of clinical significance. To fully leverage this technology in a clinical setting, results need t
Externí odkaz:
https://doaj.org/article/4c8deef481c04a2a81f78c1e99428dc9
Autor:
Steven N Hart, Vivekananda Sarangi, Raymond Moore, Saurabh Baheti, Jaysheel D Bhavsar, Fergus J Couch, Jean-Pierre A Kocher
Publikováno v:
PLoS ONE, Vol 8, Iss 12, p e83356 (2013)
BACKGROUND: Structural variation (SV) represents a significant, yet poorly understood contribution to an individual's genetic makeup. Advanced next-generation sequencing technologies are widely used to discover such variations, but there is no single
Externí odkaz:
https://doaj.org/article/15e3a2cf33274b24aa741291a8b1456b
Autor:
Krishna R Kalari, Brian M Necela, Xiaojia Tang, Kevin J Thompson, Melissa Lau, Jeanette E Eckel-Passow, Jennifer M Kachergus, S Keith Anderson, Zhifu Sun, Saurabh Baheti, Jennifer M Carr, Tiffany R Baker, Poulami Barman, Derek C Radisky, Richard W Joseph, Sarah A McLaughlin, High-seng Chai, Stephan Camille, David Rossell, Yan W Asmann, E Aubrey Thompson, Edith A Perez
Publikováno v:
PLoS ONE, Vol 8, Iss 11, p e79298 (2013)
Our goal in these analyses was to use genomic features from a test set of primary breast tumors to build an integrated transcriptome landscape model that makes relevant hypothetical predictions about the biological and/or clinical behavior of HER2-po
Externí odkaz:
https://doaj.org/article/b4f7343083b74f57913c4b514a195e31