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of 10
pro vyhledávání: '"Saule, Cédric"'
Autor:
Saule, Cédric
Ces travaux de thèse proposent une modélisation des structures secondaires d'ARN avec ou sans pseudonoeuds. Selon une approche combinatoire, nous concevons différents modèles de ces structures que nous étudions sous deux aspects. D'une part, nou
Externí odkaz:
http://tel.archives-ouvertes.fr/tel-00788467
http://tel.archives-ouvertes.fr/docs/00/78/84/67/PDF/Memoire-these.pdf
http://tel.archives-ouvertes.fr/docs/00/78/84/67/PDF/Memoire-these.pdf
Autor:
Ponty, Yann, Saule, Cédric
Publikováno v:
11th Workshop on Algorithms in Bioinformatics (WABI'11) (2011)
We extend an hypergraph representation, introduced by Finkelstein and Roytberg, to unify dynamic programming algorithms in the context of RNA folding with pseudoknots. Classic applications of RNA dynamic programming energy minimization, partition fun
Externí odkaz:
http://arxiv.org/abs/1106.3771
Autor:
Saule, Cédric1 cedric.saule@uni-bielefeld.de, Giegerich, Robert1
Publikováno v:
Algorithms for Molecular Biology. Jul2015, Vol. 10 Issue 1, Special section p2-20. 20p.
Publikováno v:
GASCOM
GASCOM, Sep 2010, Montreal, Canada
GASCOM, Sep 2010, Montreal, Canada
International audience; We give an efficient algorithm to generate random RNA secondary structures with pseudoknots, either uniformly or non uniformly in a controllable fashion. Although we consider a restrictive class of pseudoknots, the class of {\
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::e1692793d2930dc3f1b390b45841c321
https://inria.hal.science/inria-00543315/file/SaWaDe2010.pdf
https://inria.hal.science/inria-00543315/file/SaWaDe2010.pdf
Autor:
Saule, Cédric, Giegerich, Robert
Publikováno v:
Algorithms for Molecular Biology : AMB
Pareto optimization combines independent objectives by computing the Pareto front of its search space, defined as the set of all solutions for which no other candidate solution scores better under all objectives. This gives, in a precise sense, bette
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::98f459235501c78ef38797f0887b3eb4
https://pubmed.ncbi.nlm.nih.gov/26150892
https://pubmed.ncbi.nlm.nih.gov/26150892
Autor:
Saule, Cédric, Giegerich, Robert
Pareto optimization combines independent objectives by computing the Pareto front of its search space, defined as the set of all candidates whose scores are not dominated by others in at least one objective. This gives, in a precise sense, better inf
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::089c88de4b07cf551a619fc54c110272
Autor:
Saule, Cédric
Publikováno v:
Bio-informatique [q-bio.QM]. Université Paris Sud-Paris XI, 2011. Français
This thesis proposes a model of RNA secondary structures with or without pseudoknots. According to a combinatorial approach, we design different models of these structures which we study according to two aspects. In one hand, we define random generat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______212::a35fb2596cb04cb52e4ee59489448eef
https://tel.archives-ouvertes.fr/tel-00788467
https://tel.archives-ouvertes.fr/tel-00788467
Publikováno v:
Algorithms; 2016, Vol. 9 Issue 1, p12, 24p
Akademický článek
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Autor:
Allali J; LaBRI, UMR 5800 CNRS, Université Bordeaux, 351, Cours de la Libération, 33405 Talence Cédex, France., Saule C, Chauve C, d'Aubenton-Carafa Y, Denise A, Drevet C, Ferraro P, Gautheret D, Herrbach C, Leclerc F, de Monte A, Ouangraoua A, Sagot MF, Termier M, Thermes C, Touzet H
Publikováno v:
Advances in bioinformatics [Adv Bioinformatics] 2012; Vol. 2012, pp. 893048. Date of Electronic Publication: 2012 May 23.