Exploring the medicinally important secondary metabolites landscape through the lens of transcriptome data in fenugreek (Trigonella foenum graecum L.).

Autor: Naika, Mahantesha B. N.^1,2 (AUTHOR), Sathyanarayanan, Nitish^1,3 (AUTHOR), Sajeevan, Radha Sivarajan¹ (AUTHOR), Bhattacharyya, Teerna¹ (AUTHOR), Ghosh, Pritha¹ (AUTHOR), Iyer, Meenakshi S.¹ (AUTHOR), Jarjapu, Mahita¹ (AUTHOR), Joshi, Adwait G.¹ (AUTHOR), Harini, K.¹ (AUTHOR), Shafi, K. Mohamed^1,3 (AUTHOR), Kalmankar, Neha^1,3 (AUTHOR), Karpe, Snehal D.¹ (AUTHOR), Mam, Bhavika^1,3 (AUTHOR), Pasha, Shaik Naseer¹ (AUTHOR), Sowdhamini, Ramanathan¹ (AUTHOR) mini@ncbs.res.in

Publikováno v: Scientific Reports. 8/8/2022, Vol. 12 Issue 1, p1-13. 13p.

A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways

Autor: Adwait G. Joshi, K. Harini, Iyer Meenakshi, K. Mohamed Shafi, Shaik Naseer Pasha, Jarjapu Mahita, Radha Sivarajan Sajeevan, Snehal D. Karpe, Pritha Ghosh, Sathyanarayanan Nitish, A. Gandhimathi, Oommen K. Mathew, Subramanian Hari Prasanna, Manoharan Malini, Eshita Mutt, Mahantesha Naika, Nithin Ravooru, Rajas M. Rao, Prashant N. Shingate, Anshul Sukhwal, Margaret S. Sunitha, Atul K. Upadhyay, Rithvik S. Vinekar, Ramanathan Sowdhamini

Publikováno v: MethodsX, Vol 7, Iss , Pp 101053- (2020)

This protocol describes a stepwise process to identify proteins of interest from a query proteome derived from NGS data. We implemented this protocol on Moringa oleifera transcriptome to identify proteins involved in secondary metabolite and vitamin

Externí odkaz: https://doaj.org/article/21c227e8302543dca462675eb86eb9d7

Dataset for the combined transcriptome assembly of M. oleifera and functional annotation

Autor: Shaik Naseer Pasha, Oommen K. Mathew, Mahantesha B.N. Naika, Margaret S. Sunitha, Anshul Sukhwal, Rajas M. Rao, Radha Sivarajan Sajeevan, Atul Kumar Upadhyay, Adwait G. Joshi, Nithin Ravooru, Manoharan Malini, Jarjapu Mahita, K. Harini, Prashant Shingate, K. Mohamed Shafi, Pritha Ghosh, Sathyanarayanan Nitish, Ramanathan Sowdhamini, Iyer Meenakshi, A. Gandhimathi, Eshita Mutt, Snehal D. Karpe, Subramanian Hari Prasanna, Rithvik S. Vinekar

Publikováno v: Data in Brief, Vol 30, Iss, Pp 105416-(2020)

In this paper, we present the data acquired during transcriptome analysis of the plant Moringa oleifera [1] from five different tissues (root, stem, leaf, flower and seed) by RNA sequencing. A total of 271 million reads were assembled with an N50 of

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::604320317d08d1d49c0fe847f3fa298f
http://www.sciencedirect.com/science/article/pii/S2352340920303103

The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera)

Autor: Rithvik S. Vinekar, K. Harini, Atul Kumar Upadhyay, Jarjapu Mahita, Eshita Mutt, Nithin Ravooru, Mahantesha B.N. Naika, Oommen K. Mathew, Margaret S. Sunitha, K. Mohamed Shafi, Iyer Meenakshi, Sathyanarayanan Nitish, Radha Sivarajan Sajeevan, A. Gandhimathi, Shaik Naseer Pasha, Subramanian Hari Prasanna, Rajas M. Rao, Ramanathan Sowdhamini, Anshul Sukhwal, Manoharan Malini, Snehal D. Karpe, Adwait G. Joshi, Prashant Shingate, Pritha Ghosh

Publikováno v: Genomics. 112(1)

Moringa oleifera is a plant well-known for its nutrition value, drought resistance and medicinal properties. cDNA libraries from five different tissues (leaf, root, stem, seed and flower) of M. oleifera cultivar Bhagya were generated and sequenced. W

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6c7737529e2518c5061e7deffc9f5e8a
https://pubmed.ncbi.nlm.nih.gov/31048014

Tento výsledek nelze pro nepřihlášené uživatele zobrazit.
K zobrazení výsledku je třeba se přihlásit.