Exploring the medicinally important secondary metabolites landscape through the lens of transcriptome data in fenugreek (Trigonella foenum graecum L.).

Autor: Naika, Mahantesha B. N.^1,2 (AUTHOR), Sathyanarayanan, Nitish^1,3 (AUTHOR), Sajeevan, Radha Sivarajan¹ (AUTHOR), Bhattacharyya, Teerna¹ (AUTHOR), Ghosh, Pritha¹ (AUTHOR), Iyer, Meenakshi S.¹ (AUTHOR), Jarjapu, Mahita¹ (AUTHOR), Joshi, Adwait G.¹ (AUTHOR), Harini, K.¹ (AUTHOR), Shafi, K. Mohamed^1,3 (AUTHOR), Kalmankar, Neha^1,3 (AUTHOR), Karpe, Snehal D.¹ (AUTHOR), Mam, Bhavika^1,3 (AUTHOR), Pasha, Shaik Naseer¹ (AUTHOR), Sowdhamini, Ramanathan¹ (AUTHOR) mini@ncbs.res.in

Publikováno v: Scientific Reports. 8/8/2022, Vol. 12 Issue 1, p1-13. 13p.

A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways

Autor: Adwait G. Joshi, K. Harini, Iyer Meenakshi, K. Mohamed Shafi, Shaik Naseer Pasha, Jarjapu Mahita, Radha Sivarajan Sajeevan, Snehal D. Karpe, Pritha Ghosh, Sathyanarayanan Nitish, A. Gandhimathi, Oommen K. Mathew, Subramanian Hari Prasanna, Manoharan Malini, Eshita Mutt, Mahantesha Naika, Nithin Ravooru, Rajas M. Rao, Prashant N. Shingate, Anshul Sukhwal, Margaret S. Sunitha, Atul K. Upadhyay, Rithvik S. Vinekar, Ramanathan Sowdhamini

Publikováno v: MethodsX, Vol 7, Iss , Pp 101053- (2020)

This protocol describes a stepwise process to identify proteins of interest from a query proteome derived from NGS data. We implemented this protocol on Moringa oleifera transcriptome to identify proteins involved in secondary metabolite and vitamin

Externí odkaz: https://doaj.org/article/21c227e8302543dca462675eb86eb9d7

Dataset for the combined transcriptome assembly of

Autor: K Mohamed, Shafi, Adwait G, Joshi, Iyer, Meenakshi, Shaik Naseer, Pasha, K, Harini, Jarjapu, Mahita, Radha Sivarajan, Sajeevan, Snehal D, Karpe, Pritha, Ghosh, Sathyanarayanan, Nitish, A, Gandhimathi, Oommen K, Mathew, Subramanian Hari, Prasanna, Manoharan, Malini, Eshita, Mutt, Mahantesha, Naika, Nithin, Ravooru, Rajas M, Rao, Prashant N, Shingate, Anshul, Sukhwal, Margaret S, Sunitha, Atul K, Upadhyay, Rithvik S, Vinekar, Ramanathan, Sowdhamini

Publikováno v: Data in Brief

In this paper, we present the data acquired during transcriptome analysis of the plant Moringa oleifera [1] from five different tissues (root, stem, leaf, flower and seed) by RNA sequencing. A total of 271 million reads were assembled with an N50 of

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::da7f41a0a68ecb3976c4667779c03097
https://pubmed.ncbi.nlm.nih.gov/32309524

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Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Autor: Ramya Malarini, Margaret S. Sunitha, Malali Gowda, K. Harini, A. Gandhimathi, Oommen K. Mathew, Sony Malhotra, Sathyanarayanan Nitish, Manoharan Malini, Ramanathan Sowdhamini, Anita Chacko, Adwait G. Joshi, Swati Kaushik, Snehal D. Karpe, Shaik Naseer Pasha, Prashant Shingate, Agnel Praveen Joseph, Pritha Ghosh, Nagesh A. Kuravadi, S Shilpa, Eshita Mutt, Jarjapu Mahita, Chandana Shankara Lingu, S. Ramaswamy, Atul Kumar Upadhyay, Heikham Russiachand Singh, Anshul Sukhwal, Anantharamanan Rajamani, Mahantesha B.N. Naika, Manojkumar Sumathi, Upadhyayula S. Raghavender

Publikováno v: BMC Plant Biology

Background Krishna Tulsi, a member of Lamiaceae family, is a herb well known for its spiritual, religious and medicinal importance in India. The common name of this plant is ‘Tulsi’ (or ‘Tulasi’ or ‘Thulasi’) and is considered sacred by H

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a755080079dc23780aaf47b70a5ca410
http://europepmc.org/articles/PMC4552454