Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

Autor: Yoann Seeleuthner, Samuel Mondy, Vincent Lombard, Quentin Carradec, Eric Pelletier, Marc Wessner, Jade Leconte, Jean-François Mangot, Julie Poulain, Karine Labadie, Ramiro Logares, Shinichi Sunagawa, Véronique de Berardinis, Marcel Salanoubat, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, Tara Oceans Coordinators, Stephane Pesant, Nicole Poulton, Ramunas Stepanauskas, Peer Bork, Chris Bowler, Pascal Hingamp, Matthew B. Sullivan, Daniele Iudicone, Ramon Massana, Jean-Marc Aury, Bernard Henrissat, Eric Karsenti, Olivier Jaillon, Mike Sieracki, Colomban de Vargas, Patrick Wincker

Publikováno v: Nature Communications, Vol 9, Iss 1, Pp 1-10 (2018)

The biology of many marine protists, such as stramenopiles, remains obscure. Here, the authors exploit single-cell genomics and metagenomics to analyze the genome content and apparent oceanic distribution of seven prevalent lineages of uncultured het

Externí odkaz: https://doaj.org/article/1fb8b9f08dee44feba89d53cf53dbe54

Insights into biotic and abiotic modulation of ocean mesopelagic communities

Autor: Manoela C. Brandão, Sarah Searson, Florian Kokoszka, Nicolas Henry, Matthew B. Sullivan, Yawouvi Dodji Soviadan, Lars Stemmann, Hiroyuki Ogata, Juan José Pierella Karlusich, Céline Dimier, Stephane Pesant, Hisashi Endo, Dean R. Vik, Janaina Rigonato, Chris Bowler, Samuel Chaffron, Olivier Jaillon, Eric Karsenti, Ahmed A. Zayed, Daniele Iudicone, Julie Poulain, Shinichi Sunagawa, Marko Budinich, Karine Labadie, Alejandro A. Murillo, Marion Gehlen, Paul Frémont, Fabien Lombard, Ann C. Gregory, Peer Bork, Stefanie Kandels, Patrick Wincker, Colomban de Vargas, Marc Picheral, Damien Eveillard

Marine plankton mitigate anthropogenic greenhouse gases, modulate biogeochemical cycles, and provide fishery resources. Plankton is distributed across a stratified ecosystem of sunlit surface waters and a vast, though understudied, mesopelagic ‘dar

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a5ee5ebade338db0a21de78dfacc258b
https://hal.science/hal-03166899/document

A global ocean atlas of eukaryotic genes

Autor: Quentin, Carradec, Eric, Pelletier, Corinne, Da Silva, Adriana, Alberti, Yoann, Seeleuthner, Romain, Blanc-Mathieu, Gipsi, Lima-Mendez, Fabio, Rocha, Leila, Tirichine, Karine, Labadie, Amos, Kirilovsky, Alexis, Bertrand, Stefan, Engelen, Mohammed-Amin, Madoui, Raphaël, Méheust, Julie, Poulain, Sarah, Romac, Daniel J, Richter, Genki, Yoshikawa, Céline, Dimier, Stefanie, Kandels-Lewis, Marc, Picheral, Sarah, Searson, Olivier, Jaillon, Jean-Marc, Aury, Eric, Karsenti, Matthew B, Sullivan, Shinichi, Sunagawa, Peer, Bork, Fabrice, Not, Pascal, Hingamp, Jeroen, Raes, Lionel, Guidi, Hiroyuki, Ogata, Colomban, de Vargas, Daniele, Iudicone, Chris, Bowler, Jean, Weissenbach

Publikováno v: Nature Communications, Vol. 9, no.1, p. 1 (2018)
Nature Communications

While our knowledge about the roles of microbes and viruses in the ocean has increased tremendously due to recent advances in genomics and metagenomics, research on marine microbial eukaryotes and zooplankton has benefited much less from these new te

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::1478b123cc05d093df0b2af0708c9f23
http://edoc.mdc-berlin.de/17063/7/17063suppl.zip

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

Autor: Simon Roux, Patrick Wincker, Marc Picheral, Alexander Loy, Silvia G. Acinas, Stephane Pesant, Bonnie T. Poulos, Julie Poulain, Jennifer R. Brum, Elena Lara, Shinichi Sunagawa, Sarah Searson, Adriana Alberti, Corinne Cruaud, Stefanie Kandels-Lewis, Peer Bork, Carlos M. Duarte, Dolors Vaqué, Josep M. Gasol, Natalie Solonenko, Céline Dimier, Bas E. Dutilh, Melissa B. Duhaime, Mathew B. Sullivan

Publikováno v: Nature
Nature, 2016, 537 (7622), pp.689-693. ⟨10.1038/nature19366⟩
Roux, S; Brum, JR; Dutilh, BE; Sunagawa, S; Duhaime, MB; Loy, A; et al.(2016). Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses. Nature, 537(7622), 689-693. doi: 10.1038/nature19366. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/5mz524gs
Nature, Nature Publishing Group, 2016, 537 (7622), pp.689-693. ⟨10.1038/nature19366⟩
Nature, 537, 689-693
Nature (Basingstoke, Online) 537 (2016): 689–693. doi:10.1038/nature19366
info:cnr-pdr/source/autori:Roux S.; Brum J.R.; Dutilh B.E.; Sunagawa S.; Duhaime M.B.; Loy A.; Poulos B.T.; Solonenko N.; Lara E.; Poulain J.; Pesant S.; Kandels-Lewis S.; Dimier C.; Picheral M.; Searson S.; Cruaud C.; Alberti A.; Duarte C.M.; Gasol J.M.; Vaque D.; Bork P.; Acinas S.G.; Wincker P.; Sullivan M.B./titolo:Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses/doi:10.1038%2Fnature19366/rivista:Nature (Basingstoke, Online)/anno:2016/pagina_da:689/pagina_a:693/intervallo_pagine:689–693/volume:537
Digital.CSIC. Repositorio Institucional del CSIC
instname
Nature, 537, 7622, pp. 689-693

Roux, Simon ... et al.-- 5 pages, 3 figures, supporting information https://dx.doi.org/10.1038/nature19366
Ocean microbes drive biogeochemical cycling on a global scale1. However, this cycling is constrained by viruses that affect community comp

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::40d2247e673ebba46d1bfb60ee24d89b
https://hal.sorbonne-universite.fr/hal-01376822

Ocean plankton. Determinants of community structure in the global plankton interactome

Autor: Gipsi, Lima-Mendez, Karoline, Faust, Nicolas, Henry, Johan, Decelle, Sébastien, Colin, Fabrizio, Carcillo, Samuel, Chaffron, J Cesar, Ignacio-Espinosa, Simon, Roux, Flora, Vincent, Lucie, Bittner, Youssef, Darzi, Jun, Wang, Stéphane, Audic, Léo, Berline, Gianluca, Bontempi, Ana M, Cabello, Laurent, Coppola, Francisco M, Cornejo-Castillo, Francesco, d'Ovidio, Luc, De Meester, Isabel, Ferrera, Marie-José, Garet-Delmas, Lionel, Guidi, Elena, Lara, Stéphane, Pesant, Marta, Royo-Llonch, Guillem, Salazar, Pablo, Sánchez, Marta, Sebastian, Caroline, Souffreau, Céline, Dimier, Marc, Picheral, Sarah, Searson, Stefanie, Kandels-Lewis, Gabriel, Gorsky, Fabrice, Not, Hiroyuki, Ogata, Sabrina, Speich, Lars, Stemmann, Jean, Weissenbach, Patrick, Wincker, Silvia G, Acinas, Shinichi, Sunagawa, Peer, Bork, Matthew B, Sullivan, Eric, Karsenti, Chris, Bowler, Colomban, de Vargas

Publikováno v: Science (New York, N.Y.). 348(6237)

Species interaction networks are shaped by abiotic and biotic factors. Here, as part of the Tara Oceans project, we studied the photic zone interactome using environmental factors and organismal abundance profiles and found that environmental factors

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::8cedb1f0a7d5992adfad6692a437f76e
https://pubmed.ncbi.nlm.nih.gov/25999517