Zobrazeno 1 - 10
of 78
pro vyhledávání: '"Sarah J Adamowicz"'
Publikováno v:
PLoS Computational Biology, Vol 19, Iss 3, p e1010154 (2023)
Missing observations in trait datasets pose an obstacle for analyses in myriad biological disciplines. Considering the mixed results of imputation, the wide variety of available methods, and the varied structure of real trait datasets, a framework fo
Externí odkaz:
https://doaj.org/article/e6066688b43c44bfb40649b63e223b46
Autor:
Elizabeth E Boyle, Sarah J Adamowicz
Publikováno v:
PLoS ONE, Vol 10, Iss 6, p e0126662 (2015)
Studies examining phylogenetic community structure have become increasingly prevalent, yet little attention has been given to the influence of the input phylogeny on metrics that describe phylogenetic patterns of co-occurrence. Here, we examine the i
Externí odkaz:
https://doaj.org/article/a76a09748af14e179a37caf4152abbae
Publikováno v:
PLoS ONE, Vol 6, Iss 5, p e18364 (2011)
The region of Churchill, Manitoba, contains a wide variety of habitats representative of both the boreal forest and arctic tundra and has been used as a model site for biodiversity studies for nearly seven decades within Canada. Much previous work ha
Externí odkaz:
https://doaj.org/article/f0cdb8cca64c4cfcb1c021ac0dfb3a28
Autor:
Cameron M. Nugent, Sarah J. Adamowicz
Publikováno v:
Metabarcoding and Metagenomics, Vol 4, Iss , Pp 81-89 (2020)
Characterization of biodiversity from environmental DNA samples and bulk metabarcoding data is hampered by off-target sequences that can confound conclusions about a taxonomic group of interest. Existing methods for isolation of target sequences rely
Externí odkaz:
https://doaj.org/article/16decd04a40640b6a013b95e42f93d30
Autor:
Christopher A Hempel, Natalie Wright, Julia Harvie, Jose S Hleap, Sarah J Adamowicz, Dirk Steinke
Publikováno v:
Nucleic Acids Research. 50:9279-9293
Metagenomics and total RNA sequencing (total RNA-Seq) have the potential to improve the taxonomic identification of diverse microbial communities, which could allow for the incorporation of microbes into routine ecological assessments. However, these
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::397b2c871f62f1db7a3f501df5c8419c
https://doi.org/10.1093/nar/gkac689
https://doi.org/10.1093/nar/gkac689
The small subunit (SSU) ribosomal RNA (rRNA) is the most commonly used marker for the identification of microbial taxa, but its full-length reconstruction from high-throughput sequencing (HTS) data remains challenging, especially for complex and dive
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1fc5bf07315a3b679a4bcb884a0d00ad
https://doi.org/10.1101/2022.08.26.505493
https://doi.org/10.1101/2022.08.26.505493
Autor:
Tyler A. Elliott, Sarah J. Adamowicz, Paul D. N. Hebert, Cameron M. Nugent, Sujeevan Ratnasingham
Publikováno v:
Molecular Ecology Resources. 21:2832-2846
DNA barcoding and metabarcoding are now widely used to advance species discovery and biodiversity assessments. High-throughput sequencing (HTS) has expanded the volume and scope of these analyses, but elevated error rates introduce noise into sequenc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::12be46a1a4026506a88d7d9915136d20
https://doi.org/10.1111/1755-0998.13384
https://doi.org/10.1111/1755-0998.13384
Missing observations in trait datasets pose an obstacle for analyses in myriad biological disciplines. Considering the mixed results of imputation, the wide variety of available methods, and the varied structure of real trait datasets, a framework fo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96bb9f489e69e787e5d585e46631102d
https://doi.org/10.1101/2022.05.03.490388
https://doi.org/10.1101/2022.05.03.490388
Publikováno v:
Journal of Molecular Evolution. 88:689-702
Myriad environmental and biological traits have been investigated for their roles in influencing the rate of molecular evolution across various taxonomic groups. However, most studies have focused on a single trait, while controlling for additional f
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4ff50bad63942fe769a01ca17e9911d5
https://doi.org/10.1007/s00239-020-09967-9
https://doi.org/10.1007/s00239-020-09967-9
Publikováno v:
Genome. 63:291-305
Biological conclusions based on DNA barcoding and metabarcoding analyses can be strongly influenced by the methods utilized for data generation and curation, leading to varying levels of success in the separation of biological variation from experime
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1f70241c79ede1906fca0cd307639186
https://doi.org/10.1139/gen-2019-0206
https://doi.org/10.1139/gen-2019-0206