Resilience of genetic diversity in forest trees over the Quaternary

Autor: Pascal Milesi, Chedly Kastally, Benjamin Dauphin, Sandra Cervantes, Francesca Bagnoli, Katharina B. Budde, Stephen Cavers, Bruno Fady, Patricia Faivre-Rampant, Santiago C. González-Martínez, Delphine Grivet, Felix Gugerli, Véronique Jorge, Isabelle Lesur Kupin, Dario I. Ojeda, Sanna Olsson, Lars Opgenoorth, Sara Pinosio, Christophe Plomion, Christian Rellstab, Odile Rogier, Simone Scalabrin, Ivan Scotti, Giovanni G. Vendramin, Marjana Westergren, Martin Lascoux, Tanja Pyhäjärvi, On behalf of the GenTree Consortium

Publikováno v: Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)

Abstract The effect of past environmental changes on the demography and genetic diversity of natural populations remains a contentious issue and has rarely been investigated across multiple, phylogenetically distant species. Here, we perform comparat

Externí odkaz: https://doaj.org/article/ce435198aeef4ab0b47bcfd2a1aaa57c

A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm

Autor: Sara Pinosio, Gloria Pellegrino, Lucile Toniutti, Gabriele Magris, Timothy Schilling, Gabriele Di Gaspero, Benoît Bertrand, Seth C. Murray, Simone Scalabrin, Davide Scaglione, Amin Al Hakimi, Irena Jurman, Giorgio Graziosi, Nicola Vitulo, Giorgio Valle, Frederica Cattonaro, Michele Morgante, Manuela Rosanna Ruosi, Patricia E. Klein, Mario Cerutti, Luciano Navarini, Alberto Pallavicini, Lorenzo Del Terra, Furio Suggi Liverani, Nolan Bentley, Michele Vidotto, Christophe Montagnon, Federica Magni, William Solano

Publikováno v: Scientific Reports
Scientific Reports, Vol 10, Iss 1, Pp 1-13 (2020)
Scientific reports (Nature Publishing Group) 10 (2020). doi:10.1038/s41598-020-61216-7
info:cnr-pdr/source/autori:Scalabrin S.; Toniutti L.; Di Gaspero G.; Scaglione D.; Magris G.; Vidotto M.; Pinosio S.; Cattonaro F.; Magni F.; Jurman I.; Cerutti M.; Suggi Liverani F.; Navarini L.; Del Terra L.; Pellegrino G.; Ruosi M.R.; Vitulo N.; Valle G.; Pallavicini A.; Graziosi G.; Klein P.E.; Bentley N.; Murray S.; Solano W.; Al Hakimi A.; Schilling T.; Montagnon C.; Morgante M.; Bertrand B./titolo:A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm/doi:10.1038%2Fs41598-020-61216-7/rivista:Scientific reports (Nature Publishing Group)/anno:2020/pagina_da:/pagina_a:/intervallo_pagine:/volume:10

The genome of the allotetraploid species Coffea arabica L. was sequenced to assemble independently the two component subgenomes (putatively deriving from C. canephora and C. eugenioides) and to perform a genome-wide analysis of the genetic diversity

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9835663dadfdbe516f296b20657a4456
http://hdl.handle.net/11368/2960782

A draft genome of sweet cherry ( Prunus avium L.) reveals genome‐wide and local effects of domestication

Autor: Michele Morgante, Ioannis Ganopoulos, Filippos A. Aravanopoulos, Gabriella Sonnante, Sara Pinosio, Michele Vidotto, Andrea Zuccolo, Fabio Marroni, Amy Iezzoni, Gabriele Magris, Giovanni G. Vendramin, Nicola Vitulo, Stéphanie Mariette, Marino Palasciano

Publikováno v: Plant Journal
Plant Journal, Wiley, 2020, pp.1-13. ⟨10.1111/tpj.14809⟩
Plant journal
info:cnr-pdr/source/autori:Pinosio, Sara; Marroni, Fabio; Zuccolo, Andrea; Vitulo, Nicola; Mariette, Stephanie; Sonnante, Gabriella; Aravanopoulos, Filippos A.; Ganopoulos, Ioannis; Palasciano, Marino; Vidotto, Michele; Magris, Gabriele; Iezzoni, Amy; Vendramin, Giovanni G.; Morgante, Michele/titolo:A draft genome of sweet cherry (Prunus aviumL.) reveals genome-wide and local effects of domestication/doi:10.1111%2Ftpj.14809/rivista:Plant journal (Print)/anno:2020/pagina_da:1420/pagina_a:1432/intervallo_pagine:1420–1432/volume:103

Sweet cherry (Prunus avium L.) trees are both economically important fruit crops but also important components of natural forest ecosystems in Europe, Asia and Africa. Wild and domesticated trees currently coexist in the same geographic areas with im

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae05118d415fc2007e52a5e0deff7468
https://hal.inrae.fr/hal-02886425

Characterization of the poplar pan-genome by genome-wide identification of structural variation

Autor: Stefania Giacomello, Federica Cattonaro, Gail Taylor, Giusi Zaina, Catherine Bastien, Sara Pinosio, Fabio Marroni, Patricia Faivre-Rampant, Marie-Christine Le Paslier, Michele Morgante, Véronique Jorge

Publikováno v: Molecular Biology and Evolution
Molecular Biology and Evolution, Oxford University Press (OUP), 2016, 33 (10), pp.2706-2719. ⟨10.1093/molbev/msw161⟩
Molecular Biology and Evolution 10 (33), 2706-2719. (2016)
Molecular biology and evolution, vol 33, iss 10
Molecular biology and evolution 33 (2016): 2706–2719. doi:10.1093/molbev/msw161
info:cnr-pdr/source/autori:Pinosio, Sara; Giacomello, Stefania; Faivre-Rampant, Patricia; Taylor, Gail; Jorge, Veronique; Le Paslier, Marie Christine; Zaina, Giusi; Bastien, Catherine; Cattonaro, Federica; Marroni, Fabio; Morgante, Michele/titolo:Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation/doi:10.1093%2Fmolbev%2Fmsw161/rivista:Molecular biology and evolution/anno:2016/pagina_da:2706/pagina_a:2719/intervallo_pagine:2706–2719/volume:33
Molecular Biology and Evolution, 2016, 33 (10), pp.2706-2719. ⟨10.1093/molbev/msw161⟩

Article en open access; International audience; Many recent studies have emphasized the important role of structural variation (SV) in determining human genetic and phenotypic variation. In plants, studies aimed at elucidating the extent of SV are st

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6d0ce120d74b5268f7963527d8b5e24
https://hal.inrae.fr/hal-02636741

Nucleotide diversity and linkage disequilibrium in Populus nigra cinnamyl alcohol dehydrogenase (CAD4) gene

Autor: Federica Cattonaro, Federico Fogolari, Michele Morgante, Nicoletta Felice, Sara Pinosio, Giusi Zaina, Fabio Marroni

Publikováno v: Tree Genetics & Genomes

Cinnamyl alcohol dehydrogenase (CAD) is involved in the biosynthesis of lignin, a component of plant cell wall which negatively impacts paper pulp processing and biomass fermentation to ethanol. Transgenic poplars with depressed CAD activity show str

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::64ff882fcbd9e54f7a8fa7d64ae2ef2f
https://doi.org/10.1007/s11295-011-0391-5